User: Jim Java

gravatar for Jim Java
Jim Java30
Reputation:
30
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New User
Location:
United States
Last seen:
5 months, 4 weeks ago
Joined:
3 years ago
Email:
j***********@gmail.com

Posts by Jim Java

<prev • 6 results • page 1 of 1 • next >
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Comment: C: AnnotationHub - Problem with SSL CA certificate
... One possibility (but unlikely) is that you might need to wipe out the AnnotationHub metadata DB and start again: removeCache() If that fails, what happens when you try downloading any URL to disk, say curl::curl_fetch_disk("www.google.com", tempfile()) or curl::curl_fetch_disk("https://annotati ...
written 2.7 years ago by Jim Java30
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Comment: C: [Windows 10] 64. Problem installing biocLite due Warning on non writable directo
... This looks like normal behavior. R is installed with a set of core packages in a non-user library (e.g. C:/Program Files/R/R-3.2.2/library): ip <- installed.packages() ip[ip[ ,"Priority"] %in% c("base", "recommended"), c("Package", "Priority")] When biocLite() tries to update outdated packag ...
written 2.9 years ago by Jim Java30
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Comment: C: Unable to connect from R 3.2.2
... I'm able to cause a problem similar to yours on a Windows 10 upgrade. If the FIPS security mode is turned off, running source("https://www.bioconductor.org/biocLite.R") in R fails; if I turn FIPS mode on, it works. Microsoft apparently doesn't recommend FIPS mode any more, but that may not keep it ...
written 2.9 years ago by Jim Java30
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Comment: C: Unable to connect from R 3.2.2
... Does setting options(download.file.method="libcurl", url.method="libcurl") at the start of your R session change anything? ...
written 2.9 years ago by Jim Java30
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Comment: C: Issues connecting with R 3.2.2 to source("http://bioconductor.org/biocLite.R")
... That's how you should be seeing the package list in the browsers. This shouldn't be considered a fix, but I've seen options(download.file.method="libcurl", url.method="libcurl") source("https://www.bioconductor.org/biocLite.R") work when R's settings for HTTPS downloading aren't quite right for ...
written 2.9 years ago by Jim Java30
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Answer: A: Problems with "read.agiMicroRna"
... The function read.agiMicroRna is an internal function of package AgiMicroRna, and must be accessed through the "triple colon" operator :::, like so: ## Beware -- use ':::' at your own risk! AgiMicroRna:::read.agiMicroRna It appears, though, that the examples in the AgiMicroRna vignette of the rea ...
written 3.0 years ago by Jim Java30

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