User: chintanm

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Posts by chintanm

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Joint test for interactions in GWASTools
... In the "GWASTools" R Package, the "assocRegression" function allows GWAS with interactions. Suppose my model is: y ~ a + b*z + c*G + d*(z * G) where y=RESPONSE, z=Interacting variable, and G=Genomic factor. The "assocRegression" returns tests on the following null hypotheses {c=0} , {d=0}, and {c ...
gwastools written 4.1 years ago by chintanm0 • updated 4.1 years ago by Stephanie M. Gogarten720
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Comment: C: Permutations of GWAS for GWASTools
... Thank you for the prompt reply! ...
written 4.1 years ago by chintanm0
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Permutations of GWAS for GWASTools
... I want to permutation tests of the full GWAS using "GWASTools". In each permutation, responses are randomly permuted and I am interested in obtaining the p-value for each test of total genomic effect. Since the MAF and other stats are fixed, evaluating them in the permutations is unnecessary. Can I ...
gwastools written 4.1 years ago by chintanm0 • updated 4.1 years ago by Stephanie M. Gogarten720

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