User: naktang1

gravatar for naktang1
naktang10
Reputation:
0
Status:
New User
Location:
Thailand
Last seen:
5 months ago
Joined:
3 years ago
Email:
n*******@hotmail.com

Posts by naktang1

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answers
105
views
1
answers
Comment: A: very low number in normalized count but give very high in log2foldchange
... thank you for you reply, However what threshold level for LFC that you will recommend to use lfcshrink function ...
written 6 months ago by naktang10
1
vote
1
answer
105
views
1
answer
very low number in normalized count but give very high in log2foldchange
... I have one gene that have very high in log2foldchange. gene baseMean log2FoldChange lfcSE stat pvalue padj geneA  50.46458 41.13637 3.733037 11.01955 ...
deseq2 written 6 months ago by naktang10
0
votes
1
answers
135
views
1
answers
Comment: C: find gene only express in one condition in Deseq2
... Thank you for your answer. Do you have some advice if I want to do this analysis like another package or another software ...
written 7 months ago by naktang10
0
votes
1
answer
135
views
1
answer
find gene only express in one condition in Deseq2
... If I want to identify gene which express in one condition. Is it possible in deseq2. Because I think Deseq2 calculate logfoldchange for the gene that express in two condition  and test statistic for significant gene. However it will produce the gene that express in higher or lower but not the gene t ...
deseq2 written 7 months ago by naktang10 • updated 7 months ago by Michael Love19k
0
votes
1
answer
287
views
1
answer
how to select a result output from multiple factor design in deseq2
... I also read in vignette and many post about multiple factor design but I still don't get it.What I want is to compare between the same cell type and also in the same day but different in heat condition. For example Day0cellABCheatC VS Day0cellABCheatH So I design a condition as follow which I'm no ...
deseq2 written 12 months ago by naktang10 • updated 12 months ago by Michael Love19k
0
votes
1
answer
615
views
1
answer
Biostrings: problem to access indel-details (nucleotide sequence) form pairwiseAlignment()
... How to get the nucleotide at the indel position after I use pairwise pairwiseAlignment() It is easy way to get the position of indel  of pattern or subject in pairwiseAlignment() For example, start(indel(pattern(align)))) ## can get indel position in pattern start(indel(subject(align)))) ## c ...
biostrings bioconductor written 3.0 years ago by naktang10 • updated 3.0 years ago by Hervé Pagès ♦♦ 13k

Latest awards to naktang1

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 355 users visited in the last hour