User: mjmg

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mjmg0
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2 years ago
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Posts by mjmg

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Comment: C: Building mzR package under docker fails
... My bad with the libml2-dev dependency of mzR, indeed it is not the case, perhaps with another package where mzR is a dependency. For the record I also added netconfig-bin to the build. I can also confirm the compiler error on building mzR on dockerhub is probably due to insufficient memory (2 GB, s ...
written 2.1 years ago by mjmg0
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Comment: C: Building mzR package under docker fails
... I did both. Installed mzR on a local centos install and build the docker image locally (this was under windows). I'll try to replicate to verify it's not a quirk. Please feel free to do the same using the dockerfiles above.  ...
written 2.1 years ago by mjmg0
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Comment: C: Building mzR package under docker fails
... If it helps, the centos build fails on Unimod.c from pwiz: g++: internal compiler error: Killed (program cc1plus) Please submit a full bug report, with preprocessed source if appropriate. See <http://bugzilla.redhat.com/bugzilla> for instructions. make: *** [pwiz/data/common/Unimod.o] E ...
written 2.1 years ago by mjmg0
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Comment: C: Building mzR package under docker fails
... Thank you. Will try your suggestion. If this workaround proves hard to maintain in the future, I might just base my images on latest ubuntu lts or centos  Surprisingly, when I tried installing mzR on an actual installation of centos and locally building the docker image, mzR compiles to completion ...
written 2.1 years ago by mjmg0
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Building mzR package under docker fails
... Hello, I'm building docker image containing the mzR package with both centos:latest and r-base:latest (which is also used by Bioconductor docker images) as base images. Both installation of package ‘mzR’ had non-zero exit status and doesn't finish compiling at all. I'm not using the Bioconductor do ...
mzr docker debian centos rocker written 2.1 years ago by mjmg0

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