User: Donald Dunbar

gravatar for Donald Dunbar
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Posts by Donald Dunbar

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Comment: C: Limma factorial experiment: interaction parameter
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 8.1 years ago by Donald Dunbar50
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Limma factorial experiment: interaction parameter
... The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336. ...
written 8.1 years ago by Donald Dunbar50 • updated 8.1 years ago by Oscar Rueda40
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Collation of differentially expressed genes in Limma
... Hello all, I'd be grateful some advice on the best way to collate my significantly differentially expressed gene data from Limma. I have three sets of five Affy chips arranged as one factor with three levels (two treatments and a control). I build the design matrix: mydesign <- model.matrix(~ ...
affy limma written 13.7 years ago by Donald Dunbar50 • updated 3.3 years ago by Jenny Drnevich1.9k
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Comment: C: Affy: pm and mm data from AffyID
... Thanks for that. Donald -----Original Message----- From: Ben Bolstad [mailto:bolstad@stat.berkeley.edu] Sent: 20 August 2004 16:06 To: Donald Dunbar Cc: bioconductor@stat.math.ethz.ch Subject: Re: [BioC] Affy: pm and mm data from AffyID Try using something like pm(Data,"1001_at") or pm(Data,c("10 ...
written 14.7 years ago by Donald Dunbar50
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Affy: pm and mm data from AffyID
... Hello, sorry if this is a RFTM, but after reading the Affy vignette a few times, I can't find the answer, and I know it must be easy! I've loaded the Affy library and read my chips into bioconductor. I've no problem accessing PM and MM data by Index as shown in the vignette (4.1 Accessing PM and MM ...
affy written 14.7 years ago by Donald Dunbar50 • updated 14.7 years ago by James W. MacDonald49k

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