User: sjmonkley

gravatar for sjmonkley
sjmonkley20
Reputation:
20
Status:
New User
Location:
Sweden
Last seen:
2 years, 11 months ago
Joined:
3 years, 11 months ago
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s********@gmail.com

Posts by sjmonkley

<prev • 16 results • page 2 of 2 • next >
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Comment: C: Can't load package "org.Hs.eg.db"
... I am not sure that is quite it. It is only the 'org.Hs.eg.db' package that is the problem. Others load fine.(eg DESeq2, SeqGSEA). I am wondering if  'org.Hs.eg.db' involves access to a Hs gene annotation database and that is the issue. Sue ...
written 3.9 years ago by sjmonkley20
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Answer: A: Can't load package "org.Hs.eg.db"
... Still not able to load using both R 3.2.0 and R 3.1.2. After talking to a colleague now suspect we have some sort of firewall here to prevent database access (Pharma Organisation)- would that explain this error? ...
written 3.9 years ago by sjmonkley20
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Comment: C: Can't load package "org.Hs.eg.db"
... Same response as previous. I am going to try and earlier version of R   ...
written 3.9 years ago by sjmonkley20
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Answer: A: Can't load package "org.Hs.eg.db"
... Tried that and returns: > install.packages("org.Hs.eg.db", repos="http://bioconductor.org/packages/3.1/bioc") Warning in install.packages :   package ‘org.Hs.eg.db’ is not available (for R version 3.2.2) Am I correct in thinking then that I need to use an older version of R?   Sue ...
written 3.9 years ago by sjmonkley20
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Comment: C: Can't load package "org.Hs.eg.db"
... It is still not loading. output of  > library(BiocInstaller) > biocinstallRepos()                                               BioCsoft                                                BioCann             "http://bioconductor.org/packages/3.1/bioc" "http://bioconductor.org/packages/3.1/data/a ...
written 3.9 years ago by sjmonkley20
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Can't load package "org.Hs.eg.db"
... I am working through the DESeq2 workflow/tutorial on my own data and everything so far has loaded and run fine. However when I try to install package "org.Hs.eg.db". I get the error below Appreciate any help as I cannot proceed until this is sorted. :-\ Sue > source("https://bioconductor.org/b ...
org.hs.eg.db written 3.9 years ago by sjmonkley20 • updated 3.2 years ago by iankoudinova10

Latest awards to sjmonkley

Great Question 3.0 years ago, created a question with more than 5,000 views. For Can't load package "org.Hs.eg.db"
Popular Question 3.0 years ago, created a question with more than 1,000 views. For annotating gene for transcript type/biotype
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Validity of using rlog transformed counts (rld) to obtain a list of expressed genes
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Can't load package "org.Hs.eg.db"
Supporter 3.3 years ago, voted at least 25 times.

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