User: pm2015
pm2015 • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 2 years, 11 months ago
- Joined:
- 3 years, 8 months ago
- Email:
- p***************@gmail.com
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by pm2015
<prev
• 13 results •
page 1 of 2 •
next >
0
votes
0
answers
349
views
0
answers
... Hello
I am interested in using Baymeth available form Repitools package to calculate absolute methylation levels for my MBD-seq data. However, I do not have a matched ssl control. I saw the paper mention analysis without including the ssl control. However, I wasn't able to figure out how to do this ...
written 2.9 years ago by
pm2015 • 0
0
votes
2
answers
696
views
2
answers
... Thank you for replying.
...
written 3.3 years ago by
pm2015 • 0
0
votes
2
answers
696
views
2
answers
... Thanks again. I appreciate you taking time to answer my questions.
So for my dataset, would fold change be the only criteria to filter the genes to further interrogate? In the past, when analyzing similar datasets with other tools, I used a combination of fold change and p-values. Is there a way to ...
written 3.3 years ago by
pm2015 • 0
0
votes
2
answers
696
views
2
answers
... Thanks for your reply. I do understand that this is not the best dataset as it is without replicates. Cost issues prohibited the lab to include replicates and it seems the experiment was designed by someone not very familiar with statistical analyses for microarrays. I am trying my best to get some ...
written 3.3 years ago by
pm2015 • 0
0
votes
2
answers
696
views
2
answers
... Thanks for pointing it out. Sorry for the confusion. I have edited my post.
...
written 3.3 years ago by
pm2015 • 0
5
votes
2
answers
696
views
2
answers
... Hi
I am trying to analyse an agilent two-color dataset with a direct experimental design (no reference). It consists of paired (treated and untreated samples) for each time point hybridized to a single array. The data is in two cell lines (denoted as M & P). I am trying to construct a design ma ...
written 3.3 years ago by
pm2015 • 0
0
votes
1
answer
725
views
1
answer
... Hello All
I am trying to process my Illumina 450 K methylation array data using Minfi but I keep getting the following error after using the function dmpFinder.
Error in smooth.spline(lambda, vec.p0, w = ncs.weights, df = 3) :
missing or infinite values in inputs are not allowed
In addition: W ...
written 3.4 years ago by
pm2015 • 0
• updated
3.4 years ago by
Kasper Daniel Hansen ♦ 6.4k
0
votes
0
answers
607
views
0
answers
... Hello All
I am trying to process my Illumina 450 K methylation array data using Minfi but I keep getting the following error after using the function dmpFinder.
Error in smooth.spline(lambda, vec.p0, w = ncs.weights, df = 3) :
missing or infinite values in inputs are not allowed
In addition: W ...
written 3.4 years ago by
pm2015 • 0
0
votes
1
answer
829
views
1
answers
... Thanks a lot. I will proceed as you suggested.
...
written 3.6 years ago by
pm2015 • 0
0
votes
1
answer
829
views
1
answers
... Hi Gordon
Thanks for your reply. From the name of the files it does seem like RNA from the same condition has been hybridized to both channels. I do not have any further info on the hybridizations besides the names of the files themselves. I really don't understand why they were done this way.
Sor ...
written 3.6 years ago by
pm2015 • 0
• updated
3.6 years ago by
Gordon Smyth ♦ 37k
Latest awards to pm2015
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 304 users visited in the last hour