User: khauser130d

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khauser130d20
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Posts by khauser130d

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How to find particular types of overlap with GenomicRanges
... I'm looking to create 3 Hits objects with GenomicRanges. I've depicted these below. findOverlaps(..., type="start")is not adequate for returning hit1 since it misses the overlaps where the starts are not exactly aligned. Although maxgap would help with this, I'm unsure how to use it in this instanc ...
iranges genomicranges R written 4.2 years ago by khauser130d20 • updated 4.2 years ago by Michael Lawrence11k
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Comment: C: How to use GenomicRanges to find overlaps by percentage covered of interval
... Would it be possible to post pseudocode? I'm having trouble knowing how to aligh/join the ranges in a way that allows me to use pintersect afterwards ...
written 4.2 years ago by khauser130d20
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How to use GenomicRanges to find overlaps by percentage covered of interval
... I have two dataframes one with two (or more) individuals (denoted by sampleID) denoted by TEST and the other consisting of just 3 columns called REF. I want to add REF onto TEST based upon the overlaps between the "chr","start","end" columns of REFand the corresponding (in order) columns of TEST: " ...
genomicranges written 4.2 years ago by khauser130d20 • updated 4.2 years ago by Michael Lawrence11k

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Great Question 4.0 years ago, created a question with more than 5,000 views. For How to use GenomicRanges to find overlaps by percentage covered of interval
Popular Question 4.0 years ago, created a question with more than 1,000 views. For How to use GenomicRanges to find overlaps by percentage covered of interval

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