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- 4 years, 2 months ago
Posts by khauser130d
... I'm looking to create 3 Hits objects with GenomicRanges. I've depicted these below. findOverlaps(..., type="start")is not adequate for returning hit1 since it misses the overlaps where the starts are not exactly aligned. Although maxgap would help with this, I'm unsure how to use it in this instanc ...
... Would it be possible to post pseudocode? I'm having trouble knowing how to aligh/join the ranges in a way that allows me to use pintersect afterwards ...
... I have two dataframes one with two (or more) individuals (denoted by sampleID) denoted by TEST and the other consisting of just 3 columns called REF. I want to add REF onto TEST based upon the overlaps between the "chr","start","end" columns of REFand the corresponding (in order) columns of TEST: " ...
Latest awards to khauser130d
Great Question 4.0 years ago, created a question with more than 5,000 views. For How to use GenomicRanges to find overlaps by percentage covered of interval
Popular Question 4.0 years ago, created a question with more than 1,000 views. For How to use GenomicRanges to find overlaps by percentage covered of interval
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