User: ddzhangzz

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ddzhangzz0
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Posts by ddzhangzz

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DESeq2: gene-wise dispersion estimates stuck on running
... I have a dds object such like: > dds class: DESeqDataSet dim: 49305 1091 metadata(2): data_release version ... And when I run the DESeq(), it was stuck on the step of "gene-wise dispersion estimates". I have tried both "locol" and "mean" for fitType and it didn't help. I terminated ...
deseq2 written 24 days ago by ddzhangzz0 • updated 24 days ago by Michael Love17k
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Error in c(DataFrameList(META = meta), tbls[unique(tags)])
... I met some issue by running examples in R package VariantAnnotation: > library(VariantAnnotation) > fl <- system.file("extdata", "ex2.vcf", package="VariantAnnotation") > fl [1] "/usr/local/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf" > scanVcfHeader(fl) Error in c(DataFrame ...
variantannotation written 12 months ago by ddzhangzz0 • updated 12 months ago by Hervé Pagès ♦♦ 13k

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