User: Laurent Gautier

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Posts by Laurent Gautier

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Answer: A: Probe pairs location on chips // ANOVA
... On Tue, May 07, 2002 at 11:52:32AM +0200, julien.sylvestre@wotan.ens.fr wrote: > Hi, > > * Does anyone knows whether the probe pairs for a single probe set are distributed around the array on HgU95 human chips and on YgS98 yeast chips ? Try help(plotLocation) to see how location of PPSet c ...
written 15.6 years ago by Laurent Gautier150
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Answer: A: A question
... On Mon, May 06, 2002 at 07:07:45PM +0800, HYing wrote: > 1.When I use fileBrowser() in tkWidgets package, It cannot move to the parent directory. > 2.When I want to attach the Dilution data using data(Dilution) command, it print out > "Error: restore file may be from a newer version of R -- ...
written 15.6 years ago by Laurent Gautier150
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Answer: A: biobase
... On Mon, May 06, 2002 at 09:44:31AM -0700, Vawter, Marquis wrote: > Hi--I d/l the biobase package today and could not get the affy.pdf file to > open up. > > C:\Program Files\R\rw1050\library\affy\doc\affy.pdf > > Also, there seems to be some problem with using the new Bioconductor ...
written 15.6 years ago by Laurent Gautier150
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Comment: C: A question
... On Mon, May 06, 2002 at 08:24:42AM -0400, John Zhang wrote: > > ------------- Begin Forwarded Message ------------- > > From: HYing > To: "bioconductor@stat.math.ethz.ch" > Mime-Version: 1.0 > Content-Transfer-Encoding: 8bit > X-MIME-Autoconverted: from base64 to 8bit by st ...
written 15.6 years ago by Laurent Gautier150
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Re: follow-up: How to "merge" cel.containers ?
... On Mon, May 06, 2002 at 12:01:58PM +0200, julien.sylvestre@wotan.ens.fr wrote: > - The union.container.cel function works quite well > - Sorry but I still have a small problem and can't find info in your help pages or pdf doc : > It seems that generateExprSet has no default method and needs ...
probe affy written 15.6 years ago by Laurent Gautier150
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follow-up: How to "merge" cel.containers ?
... On Mon, May 06, 2002 at 10:28:41AM +0200, julien.sylvestre@wotan.ens.fr wrote: > OK. Thanks to your explanations and tips that really helped me. > > I still have a minor problem when working with cel containers, which I agree appear more flexible. > > How can i merge cel.containers (l ...
written 15.6 years ago by Laurent Gautier150
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follow-up about 'express' in affy / ANOVA question:wq
... Oooops... the last part of the follow-up was in french (just realized it).. As what is discussed could (still) be on general interest, I added a translation... > > * Je n'ai pas essay? le 'Cel.container mecanism' ; ce qui me para?t ?trange c'est que cel? fonctionnait avant (version 0.8) et ...
cdf genefilter written 15.6 years ago by Laurent Gautier150
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[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
... Forget to CC to the list (and could be relevant to others) L. 03/05/2002 14:55:35, Laurent Gautier a ?crit: >On Fri, May 03, 2002 at 03:22:16PM +0200, julien.sylvestre@wotan.ens.fr wrote: >> * I've been using the affy package for a few days, and found it very well made, and really u ...
microarray yeast genefilter affy written 15.6 years ago by Laurent Gautier150
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package affy, functions read.celfile and read.cdffile
... Hi, The functions read.celfile and read.cdffile in the package affy are reading Affymetrix '.CEL' and '.CDF' files respectively. Trying to load corrupted files (i.e. with lines missing, or with aunt Annie's chocolate cake receipe inserted in the middle) will puzzle so much the parser that it will ...
affy written 15.6 years ago by Laurent Gautier150
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Re: affy R cdf
... On Fri, Apr 19, 2002 at 08:09:59AM -0700, Dennis P. Wall wrote: > Dear Dr. Laurent, > > > I recently found your very helpful affy package and preprocessed HU_95A > CDF file. I am confused about how to use the cdf file with the CEL file > to generate expression data. I keep gettin ...
cdf affy written 15.6 years ago by Laurent Gautier150

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