User: stuti.agrawal

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Posts by stuti.agrawal

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Answer: A: Copy number analysis from Illumina 550K chip
... Hi Andrew,  Thank you very much for your quick response. Do you know of any public datasets of iDAT files which are on the 550K chip? Thanks, Stuti ...
written 4.1 years ago by stuti.agrawal0
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Answer: A: Copy number analysis from Illumina 550K chip
... Hi Andrew, Thank you for your response. I am trying to do an analysis on the copy number data from the TARGET project (https://target.nci.nih.gov/dataMatrix/). The Neuroblastoma (NBL) project has copy number data on an Illumina 550K chip and I am trying to do an analysis on that. However, these ida ...
written 4.1 years ago by stuti.agrawal0
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Error genotyping with CRLMM
... Hi, I am trying to perform copy number analysis on some methylation data (idat format) from TCGA. These are on a Illumina HumanMethylation27k chip. I am facing the following errors using CRLMM. Could you please guide me on how to go about using CRLMM for this data? > t <- genotype.Illumina( ...
crlmm copynumber illumina written 4.1 years ago by stuti.agrawal0 • updated 4.1 years ago by andrew.j.skelton73320
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Copy number analysis from Illumina 550K chip
... Hi, I am trying to use CRLMM for copy number analysis and genotyping of some human cancer samples on a Illumina 550K SNP chip. Can I used the CRLMM package for this purpose and if so, which is the annotation package I should be using?  I only have the .idat files for these samples and no sampleshe ...
crlmm copynumber illumina written 4.1 years ago by stuti.agrawal0

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