User: eli7javasky

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Posts by eli7javasky

<prev • 7 results • page 1 of 1 • next >
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Comment: C: How do I retrieve consensus peakset?
... Thank you so much ...
written 3.3 years ago by eli7javasky0
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How do I retrieve consensus peakset?
... Hi, I have been using diffBind to analyze chip-seq data. From what I understand, diffBind creates a consensus peakset from all of the peaks given as input. I have the diffBind report which gives me the differentially bound regions but I would like to see the consensus peakset that diffBind uses. He ...
diffbind peakset written 3.3 years ago by eli7javasky0 • updated 3.3 years ago by Gord Brown590
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Answer: A: Change DiffBind correlation matrix scale
... Thank you  ...
written 3.4 years ago by eli7javasky0
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Comment: C: Change DiffBind correlation matrix scale
... I got a scale between -2 and 2 for one of my datasets, but for the other it is between -3 and 3. Is there a way to change this so both are using the same scale? Thanks  ...
written 3.4 years ago by eli7javasky0
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Comment: C: Change DiffBind correlation matrix scale
... Thank you so much ...
written 3.4 years ago by eli7javasky0
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Change DiffBind correlation matrix scale
... Hi, We are trying to use diffBind and are puzzled by the scale on our correlation matrices. In one of our datasets the correlation goes between 0.9-1, while in the other from 0.7-1. Is there a way to modify it such that both are from 0-1 or 0.5-1? Thank you, Elisheva J     ...
diffbind scale correlation matrix written 3.4 years ago by eli7javasky0
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diffBind - bam not accessible
... Hi, I'm trying to analyze chip-seq histone modification data with diffBind. When I try running diffBind, it tells me that my bam files cannot be accessed. It was able to make the plot based on the peaks so it is able to access my peak files. This is the code I've been trying: mod=dba(sampleSheet= ...
diffbind bam chip-seq written 3.5 years ago by eli7javasky0

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