User: Xiao Zhang

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Xiao Zhang0
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United States
Last seen:
2 months, 2 weeks ago
Joined:
1 year, 7 months ago
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z*******@gmail.com

Posts by Xiao Zhang

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Comment: C: Call CNV in population with large depth variance
... Thank you Günter, this helps me a lot! The other question is the result of data frame of "segmentation" function. The data frame contained several columns named "seqname", "start", "end", "width", "strand", "sample", "median", "mean" and "CN". Are the "median" and "mean" here both refer to the I/NI ...
written 5 months ago by Xiao Zhang0
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Comment: C: Call CNV in population with large depth variance
... Thank you Günter. Do I need set window length by my self or set by software automatically, which is better? Do you have any refereces to set window length?  Regards, Xiao ...
written 5 months ago by Xiao Zhang0
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Call CNV in population with large depth variance
... Hi all,   I am now using cn.mops to call CNV in a plant population including 271 samples.Now the question is the sequencing depth variant from 0.00496X to 40.11X, the average depth is about 7X, most of them are 3X~10X. So do I need cluster the samples by depth that get several groups and then calc ...
cn.mops written 5 months ago by Xiao Zhang0 • updated 5 months ago by Günter Klambauer400

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