User: map2085

gravatar for map2085
map208510
Reputation:
10
Status:
New User
Location:
United States
Last seen:
1 month, 3 weeks ago
Joined:
2 years, 7 months ago
Email:
m******@med.cornell.edu

Posts by map2085

<prev • 20 results • page 1 of 2 • next >
0
votes
2
answers
1.0k
views
2
answers
Comment: C: Limma un moderated t-test
... very useful, this. I am surprised that R did not already have a 'vectorized' t.test.   ...
written 7 months ago by map208510
0
votes
2
answers
648
views
2
answers
Answer: A: only 0's may be mixed with negative subscripts
... I have same problem ...
written 7 months ago by map208510
0
votes
2
answers
562
views
2
answers
Answer: A: Pathview pathview kegg.native=TRUE throws error in img
... I have same problem ...
written 7 months ago by map208510
0
votes
1
answers
291
views
1
answers
Answer: A: msaPrettyPrint cannot handle long sequences?
... nevermind.  i see now the part of the vignette describing breaking the alignment into chunks, with the numbering restarting for each chunk.  my apologies. ...
written 16 months ago by map208510
1
vote
1
answer
291
views
1
answer
msaPrettyPrint cannot handle long sequences?
... Using the msa package, I did a multiple alignment of 3 highly similar sequences, each of length ~8 kb.   I then tried to print them to an image using the  msaPrettyPrint function.   LaTeX complains about exceeding the input stack size = 5000   ...
msa msaprettyprint() multiple sequence alignment written 16 months ago by map208510
0
votes
0
answers
342
views
0
answers
Biostrings "global" alignment does NOT return a global alignment
... The pairwiseAlignment  function of BioStrings claims to return a global alignment if type = "global", but nowhere in the documentation does it say that it trims off the ends of the reported alignment if their are gaps on one side, and thus returns a local alignment of the two sequences.  This is a b ...
alignment biostrings written 19 months ago by map208510
2
votes
1
answer
622
views
1
answer
comparative description of roast vs camera vs romer for LIMMA
... The LIMMA package has 3 algorithms for doing  "enrichment"-style analysis:     camera, roast, and romer. A general, comparative overview of these 3 algorithms would be very helpful for the community (and me, too),  At first glance, the 3 algorithms sound almost the same.  Understanding their diffe ...
limma written 20 months ago by map208510 • updated 20 months ago by Gordon Smyth33k
0
votes
3
answers
2.3k
views
3
answers
Comment: C: Pathview: *** caught segfault *** cause 'memory not mapped'
... minimal example now included.  And I posted another "answer" with sessioninfo()   (output too large to fit into first "answer") ...
written 24 months ago by map208510
0
votes
3
answers
2.3k
views
3
answers
Answer: A: Pathview: *** caught segfault *** cause 'memory not mapped'
... (Did not fit into my previous "answer")   Here is the sessioninfo: > sessionInfo() R version 3.2.2 (2015-08-14) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.3 (Santiago) locale: [1] C attached base packages: [1] parallel stats4 stats ...
written 24 months ago by map208510
0
votes
1
answer
394
views
1
answer
msa memory limitation
... The MSA package for multiple alignment fails to write multiple alignments to file (PDF) because of memory limitations (save size and main memory size)   ! TeX capacity exceeded, sorry [main memory size=1500000]. ! TeX capacity exceeded, sorry [save size=15000].   I am trying to msaPrettyPrint ...
msa written 2.0 years ago by map208510 • updated 2.0 years ago by UBodenhofer250

Latest awards to map2085

Supporter 2.2 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 135 users visited in the last hour