User: Matt McCall

gravatar for Matt McCall
Matt McCall50
Reputation:
50
Status:
New User
Location:
Last seen:
14 years, 7 months ago
Joined:
14 years, 10 months ago
Email:
m******@mail.nih.gov

Posts by Matt McCall

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
488
views
1
answer
limma object column subsetting
... In the old limma, one could subset a MAlist or RGlist (let's say RGnorm is a MAlist) by entering: RGnorm[,1:3] for the first three columns for example In the version, I'm using now (v1.8.1) this no longer works. > RGnorm[,1] Error in object$targets[j, , drop = FALSE] : incorrect number ...
limma written 14.6 years ago by Matt McCall50 • updated 14.6 years ago by Gordon Smyth38k
0
votes
0
answers
659
views
0
answers
Tcl install
... I'm trying to install widgetTools (because genefilter requires it) and it says that Tcl wasn't installed properly, but I have Tcl installed and I've even tried telling R where it is: R CMD INSTALL --configure-args="--with-tcl- include=/sw/include/tcl8.4 --with-tcl-lib=/sw/lib/tcl8.4" -l ~/Library/ ...
genefilter widgettools written 14.7 years ago by Matt McCall50
0
votes
1
answer
895
views
1
answer
Problem installing graph package
... Using R v2.0.0 on MacOS X in the R console. I was able to install most of bioconductor. I wanted to use the GOstats package (amoung a few others), and it didn't install properly. So I went back to try to find the problem, and it seems that the graph package isn't installing. Any suggestions? Matt ...
ruuid rhdf5 graph hexbin rgraphviz written 14.7 years ago by Matt McCall50 • updated 14.7 years ago by rgentleman5.5k
0
votes
1
answer
581
views
1
answers
Comment: C: contrasts.fit Error
... I updated my version and still get the same error. Here is the model matrix if that helps: cln.mm A B C D E F H I J 1 0 0 0 1 0 1 0 0 0 2 0 0 0 1 1 0 0 0 0 3 1 0 0 0 0 1 0 0 0 4 0 0 1 0 0 0 0 1 0 5 0 0 1 0 0 0 0 1 0 6 0 0 0 1 0 1 0 0 0 7 1 0 0 0 1 0 0 0 0 8 0 0 0 1 1 0 0 0 0 9 ...
written 14.8 years ago by Matt McCall50
0
votes
1
answer
581
views
1
answer
contrasts.fit Error
... When I try to run the following line of code: cln.fit2 <- contrasts.fit(cln.fit, cln.cm) where cln.fit comes from: cln.fit <- lmFit(colon$M, cln.mm) where colon is a limma object and cln.mm is the model matrix. also cln.cm is the contrast matrix from: cln.cm <- makeContrasts(MSLiver-MSLung, ...
microarray colon limma written 14.8 years ago by Matt McCall50 • updated 14.8 years ago by Gordon Smyth38k

Latest awards to Matt McCall

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 232 users visited in the last hour