User: Eric Smith

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Eric Smith0
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Posts by Eric Smith

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ChAMP MDS 1000 most variable positions
... Hi, I was wondering if anyone could confirm if the ChAMP package calls on plotMDS to display the 1000 most variable positions when running champ.load() and champ.norm(QCimages=T)?  If yes, then is plotMDS using the default gene.selection="pairwise" or the alternative ="common"?  Are the variable pos ...
champ mds written 3.7 years ago by Eric Smith0
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Comment: C: DMRcate error: object 'annotated' not found
... Excellent, thanks Tim. ...
written 3.7 years ago by Eric Smith0
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DMRcate error: object 'annotated' not found
... Hi, Can anyone help me resolve the following, thanks. I'm following The DMRcate Package User's Guide and get the following error - library(DMRcate) > data(dmrcatedata) > myMs<-logit2(myBetas) > nrow(illuminaSNPs) [1] 153113 > nrow(myMs) [1] 10042 > myMs.noSNPs<-rmSNPandCH(myMs ...
error dmrcate written 3.7 years ago by Eric Smith0 • updated 3.7 years ago by Tim Peters80

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