User: Dani

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Dani0
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Posts by Dani

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Answer: A: Pathview None of the genes or compounds mapped to the pathway
... Well I solved it myself. Maybe i can help someone with it. Pathview only accepts genes as row names so not as a column. I didn't find it in the guide so maybe this is worth adding? Sadly i had a file with duplicate genes so what i decided to do was the following: dataFC<-read.csv("D:/Users/Dan ...
written 3.9 years ago by Dani0
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Pathview None of the genes or compounds mapped to the pathway
... Hi, I'm a bio informatics student, who is just starting with R and pathview. I normalised an expression dataset, to the point where i only have to columns (one is the gene_id, and one the fold change). My file looks like this: ORF FC YHR007C 1.969895926 YBR218C ...
pathways pathview kegg empty map written 3.9 years ago by Dani0 • updated 3.9 years ago by Luo Weijun1.5k

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