User: ashkot09

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ashkot090
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Posts by ashkot09

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Comment: C: Detect CNVs in target sample
... Thanks, this worked, how to save the segplot as an image? ...
written 3.9 years ago by ashkot090
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Detect CNVs in target sample
... Hi all, Using cn.MOPS for CNV detection and it requires optimally 6 samples (6 BAM files) to effectively run the analysis. I am generating CNV plots for each chromosome but I believe it outlines the CNVs for all samples. What I want is generate plots for CNVs detected in any one sample i.e. genera ...
cn.mops cnv written 3.9 years ago by ashkot090 • updated 3.9 years ago by Günter Klambauer540
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Answer: A: Save plot as png in cn.MOPS
... awesome, that worked. ...
written 3.9 years ago by ashkot090
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Save plot as png in cn.MOPS
... Hi, I have R code as follows that uses cn.MOPS. png(filename="/home/localuser/test123.png") x <- plot(res) dev.off(); I want to plot res but save as image. The above does not work, any ideas?   ...
cn.mops written 3.9 years ago by ashkot090
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cn.MOPS output file
... Hi all, i have the following lines of code in my R script and it does not work, I am calling my R script from python. dev.print(jpeg,filename=paste("/home/localuser,"/","file1.jpg",sep=""),width=500,height=500); dev.off(); So i decided to not use this approach and realized that cn.MOPS produces a ...
cn.mops written 3.9 years ago by ashkot090 • updated 3.9 years ago by Günter Klambauer540
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Comment: C: refSeqName issue in cn.MOPS
... where is the method seqlevels located? ...
written 3.9 years ago by ashkot090
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Comment: C: refSeqName issue in cn.MOPS
... Thanks Gunter, this has worked. ...
written 3.9 years ago by ashkot090
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refSeqName issue in cn.MOPS
... I was wondering if someone could help. I recently came across cn.MOPS and it's very good. While I was trying to use it I noticed that it asks for refSeqName and initially it led me to believe it is looking for the name of the reference file. But I don't think that is the case so then what should be ...
cn.mops cnv written 3.9 years ago by ashkot090 • updated 3.9 years ago by Günter Klambauer540

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