User: cs3jd

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cs3jd0
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Posts by cs3jd

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Comment: C: DESeq2 multiple factors design for host-parasite interaction
... Hi Michael,  Thank you for the clear answers. One additional question: According to PCA plot as well as inter-sample correlation heatmap, libraries were basically clustered based on phenotype --- S and R as shown above. If I subset samples based on phenotype and then use design= ~ parasite + host ...
written 2.9 years ago by cs3jd0
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DESeq2 multiple factors design for host-parasite interaction
... Hi All, I am working on RNAseq data of parasites from three populations (p1, p2, p3) during its interaction between two different hosts (h1 and h2). so finally I have 6 conditions (3 populations X 2 hosts) and each condition have 3 replicates. It has been observed that p1h1, p2h1, p3h1 and p2h2 hav ...
deseq2 written 2.9 years ago by cs3jd0 • updated 2.9 years ago by Michael Love20k

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