User: minnie

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minnie0
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Posts by minnie

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Comment: C: UPC correction for GC content?
... Hi Steve, Thank you very much for the prompt reply! I have used the UPC() function on the cel files and it has worked nicely using the annotation from pd.mogene.2.0st . Thank you again, Min ...
written 3.7 years ago by minnie0
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UPC correction for GC content?
... Hello, I am trying to use the UPC_Generic_ExpressionSet function on an expressionset (based on mouse Affymetrix data) and had trouble adjusting for the GC content bias. I know in the manual it says one can specify in the sequenceFeatureName to account for the GC content, but I wanted to ask how I m ...
scan.upc upc_generic_expressionset upc written 3.7 years ago by minnie0 • updated 3.7 years ago by Stephen Piccolo560
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Comment: C: frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
... Thank you very much for the reply! I realized after reading the paper/website in detail that it was not yet available. I'd be happy to help, but I am not sure if I am really capable since I am still a newbie in terms of coding in R. ...
written 3.8 years ago by minnie0
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frma: "mogene.2.0.stfrmavecs" availability?? - Gene Barcode 3.0
... Hello, I am trying to perform analyses based on the Gene Barcode 3.0 statistical software. I have installed all the relevant packages but having an issue running the frma function since I cannot seem to download the "mogene.2.0.stfrmavecs" package. (My affymetrix data is Mouse gene 2.0. ST). For i ...
frma affymetrix barcode written 3.8 years ago by minnie0 • updated 3.8 years ago by Matthew McCall830

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