User: stevenn.volant

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Posts by stevenn.volant

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Nested design with unbalanced groups
... Hello, I'm facing a quite complex experimental design with 2 factors (Group and Time) and with paired samples. If the number of patients is the same for each group, i can use the trick proposed by EdgeR in "Comparisons both between and within subjects" section and then by DESeq2 in “Model matrix no ...
deseq2 written 8 months ago by stevenn.volant0 • updated 8 months ago by Michael Love19k
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Bypass dispersion estimation in DESeq2
... Hello, I use the DESeq2 package for many projects in which the number of samples is quite small. But, sometimes i have some projects with almost 700 samples and i want to do the same kind of analysis for all the projects. When the number of samples is huge the estimation of the dispersion is very ...
deseq2 written 10 months ago by stevenn.volant0 • updated 10 months ago by Michael Love19k
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Asymptotic dispersion, DESeq2
... Hi, Does someone have any idea about the asymptotic behavior (i.e. with a large number of samples) of the dispersion estimation ? Thank you ...
deseq2 written 2.7 years ago by stevenn.volant0 • updated 2.7 years ago by Michael Love19k

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