User: stevenn.volant

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Posts by stevenn.volant

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Nested design with unbalanced groups
... Hello, I'm facing a quite complex experimental design with 2 factors (Group and Time) and with paired samples. If the number of patients is the same for each group, i can use the trick proposed by EdgeR in "Comparisons both between and within subjects" section and then by DESeq2 in “Model matrix no ...
deseq2 written 5 months ago by stevenn.volant0 • updated 5 months ago by Michael Love18k
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Bypass dispersion estimation in DESeq2
... Hello, I use the DESeq2 package for many projects in which the number of samples is quite small. But, sometimes i have some projects with almost 700 samples and i want to do the same kind of analysis for all the projects. When the number of samples is huge the estimation of the dispersion is very ...
deseq2 written 7 months ago by stevenn.volant0 • updated 7 months ago by Michael Love18k
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Asymptotic dispersion, DESeq2
... Hi, Does someone have any idea about the asymptotic behavior (i.e. with a large number of samples) of the dispersion estimation ? Thank you ...
deseq2 written 2.4 years ago by stevenn.volant0 • updated 2.4 years ago by Michael Love18k

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