User: 1992

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199210
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Posts by 1992

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DESeq2: Multifactor design working with example data but not with my data
... Hallo, I have trying to perform DEseq2 analysis on my data. Some samples are sequenced in single end mode and some are in paired end mode. I would like to include this in the design when creating DESeq2 object. Here is the example of `coldata` and what I was doing sample subgroup type s1 G1 SE s ...
deseq2 multiple factor design written 18 months ago by 199210 • updated 18 months ago by Michael Love26k
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Comment: C: Help with enrichKEGG function in clusterProfiler
... I will definitely share if I get same error after upgrading. Thank you.  ...
written 3.8 years ago by 199210
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Comment: C: Help with enrichKEGG function in clusterProfiler
... Thank you very much for explanation. But why it is running properly with their data set?   ...
written 3.8 years ago by 199210
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Comment: C: Help with enrichKEGG function in clusterProfiler
... Thank you for your reply. Question updated. ...
written 3.8 years ago by 199210
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Help with enrichKEGG function in clusterProfiler
... Dear all, I've been using clusterProfiler for enrichment analysis of my illumina microarray data. When I try to use the function enrichKEGG I am facing following error. Any one has encountered this error. What might be the problem. kk=enrichKEGG(gene=genes, organism="human", pvalueCutoff=0.05, pA ...
clusterprofiler written 3.8 years ago by 199210 • updated 3.8 years ago by Martin Morgan ♦♦ 24k

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For Help with enrichKEGG function in clusterProfiler

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