User: laksharikrish

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Posts by laksharikrish

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Comment: C: DeSeq2- design experiment
... ok. i will take your comment in to consideration. I was also wondering with the comparison,i have made the log2Fc for the deferentially expressed genes are calculated by comparing the control and Sus1. But i would like to have a comparison between (control Vs. Sus) and (control Vs. Sus1) in this ex ...
written 29 days ago by laksharikrish0
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DeSeq2- design experiment
... hello, I am working on DEseQ2 to find the differentially expressed when i compare the control (3 replicates) Vs. 2 treated samples (3 replicates each, and 6 in total for treated condition) . I am mainly interested in the genes those are differentially expressed when i compare the two treatments to ...
rnaseq degseq written 4 weeks ago by laksharikrish0
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comparison of expression between orthologous species
... Hello, I am PhD student and im working on a non-model organism trying to understand the differences in expression patterns and differentially expressed genes between resistant and susceptible responses . I have 3 species (quite similar) infected with two different strains of a pathogen, some are s ...
rnaseq differential gene expression written 4 weeks ago by laksharikrish0
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Comment: C: Error in upgrading bioconductor
... It works! thank you! :) ...
written 21 months ago by laksharikrish0
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Comment: C: Error in upgrading bioconductor
... Firstly sorry for posting in the wrong place. But when I try to do biocLite("edgeR"). I get many fatal errors like base.h:28:15: fatal error: S.h: No such file or directory compilation terminated. /usr/lib64/R/etc/Makeconf:134: recipe for target 'corStruct.o' failed make: *** [corStruct.o] Error ...
written 21 months ago by laksharikrish0 • updated 21 months ago by Martin Morgan ♦♦ 20k
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Error in upgrading bioconductor
... I need to work with edgeR and im trying to upgrade Bioconductor but im getting the error 1. source("http://bioconductor.org/biocLite.R") Bioconductor version 3.2 (BiocInstaller 1.20.1), ?biocLite for help 2.  biocLite("BiocUpgrade") Error: Bioconductor version 3.2 cannot be upgraded with R ver ...
bioconductor biocupgrade written 21 months ago by laksharikrish0 • updated 21 months ago by Martin Morgan ♦♦ 20k

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