User: ilyco

gravatar for ilyco
ilyco0
Reputation:
0
Status:
New User
Location:
Last seen:
2 months, 1 week ago
Joined:
1 year, 11 months ago
Email:
i****@cam.ac.uk

Posts by ilyco

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
93
views
0
answers
IsoformSwitchAnalyzeR error input
... I don't know if anyone used this package yet, but if they did, and they successfully used imporRdata, please let me know. I used Kallisto quantified transcripts and added both counts and abundances in importRdata which resulted into this error: The data.frame passed to the 'isoformRepExpression' a ...
kallisto differential isoform usage isoform written 10 weeks ago by ilyco0
0
votes
1
answer
209
views
1
answer
tRanslatome package plots
... Hi, I have a few issues I would like to report/ask about with the tRanslatome package. When creating the basic histograms, using any of the 3 output formats, the y axis label gets cut off. Also, when creating the detailed histograms, in some cases the segments are misaligned and they face the opp ...
translatome written 20 months ago by ilyco0 • updated 20 months ago by toma.tebaldi0
0
votes
1
answers
458
views
1
answers
Comment: C: diffHic preparePairs() does not identify paired-end reads
... Thank you very much. This was very informative. ...
written 23 months ago by ilyco0
0
votes
1
answers
458
views
1
answers
Comment: C: diffHic preparePairs() does not identify paired-end reads
... Thank you very much. This was very informative. ...
written 23 months ago by ilyco0
0
votes
1
answers
458
views
1
answers
Comment: C: diffHic preparePairs() does not identify paired-end reads
... Thank you very much.  It now recognises pairs even though there is still a large number of singles. ...
written 23 months ago by ilyco0
0
votes
1
answer
458
views
1
answer
diffHic preparePairs() does not identify paired-end reads
... Hi, I am trying to run diffHic on a single chromosome. I extracted the chromosome 1 alignment data and used the bam file as an input for diffHic. However, at the preparePairs() stage, none of the reads appear as paired. This is the output from diffHic: diagnostics <- preparePairs("chr1.bam", ...
bam paired diffhic preparepairs written 23 months ago by ilyco0 • updated 23 months ago by Aaron Lun18k

Latest awards to ilyco

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 169 users visited in the last hour