User: georgewwp

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georgewwp0
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Posts by georgewwp

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Calling a package specific function in a for loop
... Dear all, I'm trying to include a Bioconductor package specific function in a for loop to output pdf files. Specifically, I ran the Swimming downstream workflow and look for DTU in 2 group of samples. After stageR following DEXSeq, I got a table dex.padj with transcripts with DTU.  geneID ...
for loop drimseq swimming downstream sapply written 6 months ago by georgewwp0 • updated 6 months ago by Martin Morgan ♦♦ 23k
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Comment: C: How to use TPM in plotMA in DESeq2
... Thank you, Michael! ...
written 7 months ago by georgewwp0
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How to use TPM in plotMA in DESeq2
... Hi all, I'm doing RNAseq analysis with DESeq2. When making MA plot, I want to position each gene on the x-axis using its mean abundance from one condition instead of rowmeans from counts(dds) across samples. This way, x-axis would carry information I'm interested in.  I quantified the transcripts ...
deseq2 tpm written 8 months ago by georgewwp0 • updated 7 months ago by Michael Love24k
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Subset VCF files using multiple criteria
... Hi there, I have a list of variants (in vcf format) called across two samples. I want to use multiple criteria to select a subset of these variants.  For example, I want to select "G" to "A" or "C" to "T" changes, since I'm only interested in these two specific type of SNPs. Also, I want these SN ...
variantannotation granges vcf written 3.3 years ago by georgewwp0

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Popular Question 3.3 years ago, created a question with more than 1,000 views. For Subset VCF files using multiple criteria

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