User: A.J. Rossini

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A.J. Rossini210
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Posts by A.J. Rossini

<prev • 21 results • page 2 of 3 • next >
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Answer: A: Affymetrix SDK Bioconductor package?
... Sure it's a good idea (under the constraints/caveats of licensing, support, etc). Why not? On 6/1/05, Kasper Daniel Hansen wrote: > Is there really no-one who thinks it is a good idea to integrate the > Affymetrix SDK for reading various file formats, into Bioconductor? > > Kasper > ...
written 14.3 years ago by A.J. Rossini210
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Answer: A: GeneSpring can call R functions?
... Sure, you can write a little GUI on top of R and sell it. As long as you obey any/all licenses stuck on to the components, some of which require you to provide both the source and the right for the buyer to have the same rights as you had. On 5/18/05, Ken Termiso wrote: > Hi all, > > I w ...
written 14.3 years ago by A.J. Rossini210
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Answer: A: Re: Sequence alignment for DNA sequences (John Zhang)
... Sure, and MEGA is a wonderful alignment tool, though last time I used it, 3+ years ago, it wasn't scriptable. I'd prefer reuse rather than reinvention, but there is a good deal to be gained from leveraging some of the statistically oriented tools (and overall systems biology integration that is hap ...
written 14.3 years ago by A.J. Rossini210
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Comment: C: Sequence alignment for DNA sequences
... I was thinking that ape (in CRAN) did automatic alignment, but I was wrong. There is a BioSeq1 package which does have an interface to clustal which might be useful; it really needs to incorporate the BioStrings data structures to be really useful, though. I can send it if it is of interest. (it ...
written 14.3 years ago by A.J. Rossini210
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Answer: A: Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
... One citation in this area which is readable is: Annu Rev Public Health. 2002;23:151-69. Epub 2001 Oct 25. Related Articles, Links The importance of the normality assumption in large public health data sets. Lumley T, Diehr P, Emerson S, Chen L. referenced at: http://www.ncbi.nlm.nih.gov ...
written 14.4 years ago by A.J. Rossini210
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Answer: A: local pooled error
... You mean besides LPE? See the BioC package list first, please, i.e. http://www.bioconductor.org/repository/release1.5/package/html/index.h tml and note LPE... On 4/14/05, Lana Schaffer wrote: > Hi, > In the S-PLUS library there are routines for using LPE or local pooled error when ass ...
written 14.4 years ago by A.J. Rossini210
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Comment: C: no BioConductor posting guide
... Looks fine to me, modulo Kasper's suggestions, which are good. Probably someone else with more brainpower or focus right now should comment as well, I'm preoccupied with a bit too much. On 4/13/05, Kasper Daniel Hansen wrote: > At first glance it seems fine to me. I would include > * Link t ...
written 14.4 years ago by A.J. Rossini210
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Answer: A: no BioConductor posting guide
... On Apr 8, 2005 1:09 PM, Adaikalavan Ramasamy wrote: > > Is this because no posting guide suitable for BioConductor has been > developed ? I am sure one can easily adapt from the R-help one. Why don't you take the first stab at it? best, -tony "Commit early,commit often, and commit in a ...
written 14.4 years ago by A.J. Rossini210
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Comment: C: bioconductor and ESS
... I really think Wolfgang is correct -- that particular command shouldn't be doing anything to change results within or without of Emacs. Please verify versions of the programs (do you have multiple R's on your laptop?) best, -tony On Wed, 09 Mar 2005 15:10:53 +0000, Wolfgang Huber wrote: > Hi ...
written 14.5 years ago by A.J. Rossini210
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Answer: A: GenomeViz again : corrected link
... Also see the ecolitk package in BioConductor, though it needs a bit more work to make it completely turnkey. On Tue, 25 Jan 2005 12:16:06 +0100, Rohit Ghai wrote: > Dear Bioconductor list users > > This is for all of you who are interested in plotting > data from microbial genomes on ...
written 14.6 years ago by A.J. Rossini210

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