User: myprogramming2016

Reputation:
0
Status:
New User
Last seen:
1 year, 10 months ago
Joined:
3 years, 2 months ago
Email:
m****************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by myprogramming2016

<prev • 34 results • page 1 of 4 • next >
1
vote
1
answer
559
views
1
answer
older version of edger installation
... Hi, I would like to install edgeR version 3.16.5. I am using following code to install, but getting a warning message.  Could you please help me? source("https://bioconductor.org/biocLite.R") biocLite("edgeRv3.16.5")  Warning message: package ‘edgeRv3.16.5’ is not available (for R version 3.3.3) ...
edger written 23 months ago by myprogramming20160 • updated 23 months ago by James W. MacDonald49k
0
votes
1
answer
4.1k
views
1
answers
Comment: C: threshold to filter lowly expressed genes
... Could you please reply to my post? Thanks ...
written 2.0 years ago by myprogramming20160
0
votes
1
answer
4.1k
views
1
answers
Comment: A: threshold to filter lowly expressed genes
... Thanks for sharing an updated workflow. It is very helpful. Secondly, I do not have a group (control Vs treated). I would like to identify differentially expressed genes in a particular individual compared with a mean of all the individuals (Intercept). I would like to repeat it for all the individ ...
written 2.1 years ago by myprogramming20160
3
votes
1
answer
4.1k
views
1
answer
threshold to filter lowly expressed genes
... Hello, I would like to use edgeR for differential Gene expression analysis.  I have read counts data on 50 individuals in three biological replicates. I would like to filter out lowly expressed genes. Is there a threshold to define express genes?   I was thinking to use CPM of >=2, and it sho ...
rnaseq edger written 2.1 years ago by myprogramming20160
0
votes
0
answers
460
views
0
answers
rate of LD decay
... Hi, I am looking for an R script to get a genome-wide LD estimate (the rate of LD decay). Does anyone has a script to get the estimate. Thanks in advance.   ...
R written 2.8 years ago by myprogramming20160
0
votes
2
answers
544
views
2
answers
Comment: C: RNAseq reads mapped to the gene
... Thanks!   ...
written 2.9 years ago by myprogramming20160
0
votes
2
answers
544
views
2
answers
Answer: A: RNAseq reads mapped to the gene
... Thanks for your help. I will go through the featureCounts manual.  I have used linux version of featureCounts.       ...
written 2.9 years ago by myprogramming20160
0
votes
2
answers
544
views
2
answers
Comment: C: RNAseq reads mapped to the gene
... Yeah, that's true.  I would like to get this estimate for each gene and each of my Individual. Thanks ...
written 2.9 years ago by myprogramming20160 • updated 2.1 years ago by Gordon Smyth37k
4
votes
2
answers
544
views
2
answers
RNAseq reads mapped to the gene
... Hi, I work on plant species. I have used STAR to map RNAseq reads and featureCounts to get expression values. I would like to counts the number of reads map to the genes and outside of genes. Is there any tool or script to get these estimates? Thanks ...
rnaseq edger featurecounts star written 2.9 years ago by myprogramming20160
0
votes
3
answers
454
views
3
answers
Answer: A: GO annotation and gene set testing for plant dataset
... Thanks Aaron !       ...
written 2.9 years ago by myprogramming20160

Latest awards to myprogramming2016

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 302 users visited in the last hour