User: goldberg.jm

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Posts by goldberg.jm

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Comment: C: Map TxDb.Hsapiens.UCSC.hg19.knownGene TXID keys to ENSEMBL transcript ID or Refs
... In theory TXID/TXNAM - ENST mappings should be 1-to-1, right? Do you know why they are not? ...
written 11 months ago by goldberg.jm0
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Comment: C: Map TxDb.Hsapiens.UCSC.hg19.knownGene TXID keys to ENSEMBL transcript ID or Refs
... Thank you... works like a charm! I really do want TXID-ENST pairings but it's good to see other examples as well. ...
written 11 months ago by goldberg.jm0
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Map TxDb.Hsapiens.UCSC.hg19.knownGene TXID keys to ENSEMBL transcript ID or Refseq ID
... Hi All, How do I map TxDb.Hsapiens.UCSC.hg19.knownGene TXID keys to ENSEMBL transcript IDs or Refseq IDs?  I know this must be a basic task, but I have been playing around with it and googling all afternoon and have not cracked it. I am sure Valerie Obenchain and many others can answer this easily. ...
annotationdbi written 11 months ago by goldberg.jm0 • updated 11 months ago by James W. MacDonald45k
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select negative control probes with GEOquery
... Hi All, Using GEOquery and MBCB, I would like to background correct raw data from an experiment on the GPL10558 platform. Normalized data and metadata were got using gset <- getGEO(accession,GSEMatrix =TRUE). Raw data were got using getGEOSuppFiles(accession,baseDir = base_directory) followed by ...
limma geoquery mbcb written 21 months ago by goldberg.jm0

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