User: gaia.zaffaroni
gaia.zaffaroni • 0
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Posts by gaia.zaffaroni
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... Hi Rory,
yes that was my idea. Thanks for pointing out that it is not the usual approach, I will go for the usual consensus then.
For sake of completeness, I went on trying your suggestion, but the same error comes up, even if I use a different DBA object to compute the consensus peaks.
Cheers,
...
written 3.8 years ago by
gaia.zaffaroni • 0
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... Hi Rory, thanks for your help.
I am using DiffBind_1.16.3. This is what I get without parallel:
prova = dba.count(prova,peaks=prova$masks$Consensus,bParallel=FALSE)
Sample: CHN080-alignedreads.bam125
Sample: CHN081-alignedreads.bam125
Sample: CHN082-alignedreads.bam125
Sample: CHN083-alignedreads ...
written 3.8 years ago by
gaia.zaffaroni • 0
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... Hello,
I have a problem with the dba.count() function.
I have two conditions with 3 replicates each, and when I do
sample = dba(sampleSheet=sampleSheet, peakFormat='bed')
sample=dba.count(sample)
or even
sample=dba.count(sample,minOverlap=6)
I have no problem. Anyway, when I try to find cons ...
written 3.8 years ago by
gaia.zaffaroni • 0
• updated
3.7 years ago by
kmavrommatis • 0
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3.8 years ago,
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For DiffBind - Error in dba.count() when passing mask or peaks
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