User: gaia.zaffaroni

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Posts by gaia.zaffaroni

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... Hi Rory, yes that was my idea. Thanks for pointing out that it is not the usual approach, I will go for the usual consensus then. For sake of completeness, I went on trying your suggestion, but the same error comes up, even if I use a different DBA object to compute the consensus peaks. Cheers, ...
written 3.8 years ago by gaia.zaffaroni0
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... Hi Rory, thanks for your help. I am using DiffBind_1.16.3. This is what I get without parallel: prova = dba.count(prova,peaks=prova$masks$Consensus,bParallel=FALSE) Sample: CHN080-alignedreads.bam125 Sample: CHN081-alignedreads.bam125 Sample: CHN082-alignedreads.bam125 Sample: CHN083-alignedreads ...
written 3.8 years ago by gaia.zaffaroni0
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... Hello, I have a problem with the dba.count() function. I have two conditions with 3 replicates each, and when I do sample = dba(sampleSheet=sampleSheet, peakFormat='bed') sample=dba.count(sample) or even sample=dba.count(sample,minOverlap=6) I have no problem. Anyway, when I try to find cons ...
written 3.8 years ago by gaia.zaffaroni0 • updated 3.7 years ago by kmavrommatis0

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Popular Question 3.8 years ago, created a question with more than 1,000 views. For DiffBind - Error in dba.count() when passing mask or peaks

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