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Posts by noor.suaini
... Hi Valerie, Thanks for your reply. I have actually tried the commands in that section on how to annotate intergenic variants. While the commands did work, it did not actually solve my problem. Variants with more than 1 PRECEDEID/FOLLOWID still did not get converted to a symbol. For example, the PRE ...
... Hi, I am new to R and am trying to use the Variant Annotation package to annotate my list of SNPs to genes within a distance of 50kb. For the intergenic SNPs, there are several gene values/IDs listed under the PRECEDEID and FOLLOWID columns. Symbol annotation doesn’t seem to work for these and I wa ...
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