User: Shian Su

gravatar for Shian Su
Shian Su20
Reputation:
20
Status:
New User
Location:
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Last seen:
18 hours ago
Joined:
3 years, 8 months ago
Email:
s***@wehi.edu.au

Posts by Shian Su

<prev • 16 results • page 2 of 2 • next >
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Comment: C: How do you test a contrast in MAST?
... Thanks, I guess having an intercept model is fine. Is this interface for contrasts documented anywhere? I couldn't quite work it out from the vignette and help pages. ...
written 2.2 years ago by Shian Su20
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How do you test a contrast in MAST?
... I am trying to analyse some single cell RNA seq data with MAST, currently I'm using an edgeR pipeline and I cannot work out how to properly test a contrast in MAST. The experimental setup is a 3x2 with 3 strains and 2 conditions, I'd like to test differential expression between the conditions withi ...
differential gene expression single-cell mast written 2.2 years ago by Shian Su20 • updated 2.2 years ago by Andrew_McDavid190
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Comment: C: Does Rhtslib currently work on Windows?
... Thanks so much Martin, the necessary code was to add `import(Rhtslib)` to the `NAMESPACE`, which I did via ROxygen's `@import` for consistency.  I still needed the `zlibbioc::pkgconfig()` code because I actually reference `zlib` directly in some of my c++. I'll post these to the dev mailing list in ...
written 2.3 years ago by Shian Su20
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Comment: C: Does Rhtslib currently work on Windows?
... Yes that `zlibVersion` was a typo, wasn't logged into bioconductor on my Windows testing laptop so I typed out the error message. Thanks for the help, I'll try it out once I'm infant of a Windows laptop again. ...
written 2.3 years ago by Shian Su20
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Does Rhtslib currently work on Windows?
... I'm helping develop scPipe which we're currently trying to contribute to Bioconductor. Unfortunately the are build issues on Windows that I am unable to resolve. Namely the package is unable to load its own DLL. I noticed that link2Rhtslib does not build on Windows with the error localfunc.o:localfu ...
package rhtslib htslib written 2.3 years ago by Shian Su20 • updated 2.3 years ago by Martin Morgan ♦♦ 24k
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Answer: C: bug in Glimma - anno can't have T/F
... Thanks for bringing this to my attention, it's definitely an unintended bug, it will be fixed in the next patch which I hope to push out by the end of the week. ...
written 3.4 years ago by Shian Su20

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