User: maria.vila

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maria.vila0
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Posts by maria.vila

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Comment: C: Vcf to VRanges conversion error: ["incorrect number of dimensions"]
... Many thanks!! It's working now with version 1.18.3 But I've another error: a<-readVcfAsVRanges("myprova2.vcf",genome="hg19") Error in if ((length(unique(elt)) != 1L) && (dim(AD)[3] != unique(elt))) { :   missing value where TRUE/FALSE needed It's coming from this record (or similar o ...
written 2.7 years ago by maria.vila0
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Comment: C: Vcf to VRanges conversion error: ["incorrect number of dimensions"]
... Could be also a problem with he Ubuntu version? I've just updated R and Bioconductor and installed VariantAnnotation 1.19.5 (should this also handle Varscan2?), and I'm getting the same error:   > a <- readVcfAsVRanges("myprovalim.vcf",genome="hg19") Error in ad[, , 1, drop = FALSE] : incorr ...
written 2.7 years ago by maria.vila0
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Vcf to VRanges conversion error: ["incorrect number of dimensions"]
... Hi all! I'm trying to read a vcf file with readVcfAsVRanges but I get the following error:(readVcf works, but then I get the error when I want to convert it to an VRanges object)   a <- readVcfAsVRanges("myprovalim.vcf",genome="hg19") Error in ad[, , 1, drop = FALSE] : incorrect number of dime ...
variantannotation somaticsignatures written 2.7 years ago by maria.vila0 • updated 2.7 years ago by Michael Lawrence10k

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