User: Seth Falcon

gravatar for Seth Falcon
Seth Falcon7.4k
Reputation:
7,430
Status:
Trusted
Location:
Last seen:
9 years, 6 months ago
Joined:
15 years ago
Email:
s******@fhcrc.org

Posts by Seth Falcon

<prev • 739 results • page 2 of 74 • next >
0
votes
1
answer
609
views
1
answers
Answer: A: SPIA package
... See below... On 3/17/10 10:52 AM, Marcos Pinho wrote: > Dear list, > > I have been trying to use the SPIA package, but have been encountering some > dificulties in creating my two vectors: one with the log2 fold changes of DE > genes and the other cobntaining the universe of all Entr ...
written 9.7 years ago by Seth Falcon7.4k
0
votes
1
answer
439
views
1
answers
Answer: A: MArray into data.frame for SPIA package
... On 3/18/10 6:02 AM, Marcos Pinho wrote: > Dear list, > > I am having difficulties in changing an MArrayLM object that resulted from > my DE analysis with Limma into a data.frame that I could use in the SPIA > package. Do not how to keep all the structure (row names, etc..) If the Lim ...
written 9.7 years ago by Seth Falcon7.4k
0
votes
2
answers
583
views
2
answers
Comment: C: farms package fails on estrogen data
... On 3/16/10 2:37 PM, bmb at bmbolstad.com wrote: > ReadAffy uses allocMatrix() to allocate the memory into which it intends > to place probe intensities read from the file. Not sure there is an issue here or not based on your comments, but just so we are all on the same page, allocMatrix alloc ...
written 9.7 years ago by Seth Falcon7.4k
0
votes
1
answer
975
views
1
answers
Comment: C: snapCGH, runBioHMM, Error: segfault from C stack overflow
... On 3/16/10 3:39 AM, Ivanek, Robert wrote: > Hi Seth, > > I tried it with a new version of R and BioConductor but I am still > getting the same error. > Any ideas? Can you make your MA.cgh2 object available (you could use a service like http://drop.io/) to share an rda file created us ...
written 9.7 years ago by Seth Falcon7.4k
0
votes
1
answer
391
views
1
answers
Answer: A: updateObject fails
... Hi Mayte, On 2/18/10 8:48 AM, Mayte Suarez-Farinas wrote: > Hi everybody. > I have an old exprSet and AffyBatch (from 2006) I believe that I need to > read. > I tried updateObject and failed, I try to get the exprs as: object at exprs > and failed. > any other idea..... Could you ...
written 9.8 years ago by Seth Falcon7.4k
0
votes
2
answers
451
views
2
answers
Answer: A: graph object question
... Hi Iain, On 2/12/10 2:17 PM, Iain Gallagher wrote: > I'm trying to build graph objects showing the relationship between > miRNA and genes. Is there a quick way to do this from a dataframe > (see toy code below)? When building my graph object I can't think my > way through getting the 'e ...
written 9.8 years ago by Seth Falcon7.4k
0
votes
1
answer
782
views
1
answers
Comment: C: GSEA using Broad genesets
... On 2/7/10 2:19 PM, Philipp Meng wrote: > Dear All, > > > I experience installation problems of the Flow Cytometry Packages on > Ubuntu Karmic 9.10. > My R version is 2.9.2 > First suggestion is to upgrade to the latest version of R and thus be able to use the most recent Biocon ...
written 9.8 years ago by Seth Falcon7.4k
0
votes
1
answer
1.5k
views
1
answers
Answer: A: Parameter names must by syntactically valid names in R
... Hi Karl, On 2/1/10 8:54 AM, Karl Brand wrote: => Anyone that could shed light on the error- > > "Parameter names must by syntactically valid names in R" > Of particular note is that identical code run 24 hrs earlier on a > different machine succeeded without this error. Unfortunat ...
written 9.8 years ago by Seth Falcon7.4k
0
votes
1
answer
730
views
1
answers
Answer: A: Question regarding Installation of annotation package which was built using SQLf
... On 1/29/10 10:45 AM, Suyog Pol wrote: > Hi > > I have built an annotation package with the help of guidlines set in the > vignette/document > "SQLforge by Marc Carlson et al." I am having problem installing it. > The following code was used for building the package:- > > if( ...
written 9.8 years ago by Seth Falcon7.4k
0
votes
2
answers
869
views
2
answers
Answer: A: WARNING: difference in sorting order depending on computer platform?!?
... Hi Jenny, On 1/28/10 12:16 PM, Jenny Drnevich wrote: > I just found a problem/discrepancy in running R on PC vs. Unix/Linux > server. Maybe it's widely known, but I didn't know about it and it > caused me big problems. Ouch, that's not a fun problem to run into. The issue here is not so ...
written 9.8 years ago by Seth Falcon7.4k

Latest awards to Seth Falcon

Popular Question 9.6 years ago, created a question with more than 1,000 views. For GOstats: hyperGTest function
Popular Question 9.6 years ago, created a question with more than 1,000 views. For [R] object is not subsettable
Student 9.6 years ago, asked a question with at least 3 up-votes. For biocLite() fails to install all limma dependencies from CRAN
Popular Question 9.6 years ago, created a question with more than 1,000 views. For [R] object is not subsettable
Centurion 9.6 years ago, created 100 posts.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 412 users visited in the last hour