User: cardenasca

gravatar for cardenasca
cardenasca40
Reputation:
40
Status:
New User
Location:
Last seen:
5 months, 4 weeks ago
Joined:
1 year, 8 months ago
Email:
c*********@hotmail.com

Posts by cardenasca

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
226
views
0
answers
bumphunter P values and significance testing
... Hi, I'm interested in the significance testing performed by bumphunter. Namely, as of now bumphunter outputs two different pvalues: 1) p.value along with the fwer and 2) p.valueArea along with the fwerArea. My understanding is that these are derived from bootstraping set at B (i.e. B=10000 for my ...
minfi bumphunter written 8 months ago by cardenasca40
0
votes
1
answers
311
views
1
answers
Comment: C: UcscTrack scan() error
... Hi Shuoguo, Did you ever get a solution for this? I ran into the same issue. Thanks! ...
written 9 months ago by cardenasca40
0
votes
0
answers
302
views
0
answers
Gviz - UcscTrack
... Hello, I have the following error after trying to load the Layered H3K27Ac track from UCSC genome browser. Any ideas as to why this will occur?   Thank you! > h3k27actrack <- UcscTrack(genome = gen, +                             chromosome = chr, +                             track = "Laye ...
gviz comet written 9 months ago by cardenasca40
2
votes
1
answer
478
views
1
answer
Minfi: estimateCellCounts rgSet
... Hello, I would like to use the estimateCellCounts function without having to input an rgSet object (i.e. I only have access to betas and the genomic ratio set). Is there a way to back transform to an rgSet from the process betas or the genomic ratio set so I can use the function with the available ...
minfi 450k flowsorted.blood.450k written 19 months ago by cardenasca40 • updated 12 months ago by Habil Zare60
6
votes
2
answers
763
views
6 follow
2
answers
Plotting Differentially Methylated Regions
... Hello, I have employed several DMR finding methods and I'm now interested in visualizing the region. I would like to visualize the individual methylation level of each CpG for every observation in the DMR (y-axis) across the genomic location (x-axis) with a loess line by levels of a factor variabl ...
minfi bumphunter 450k region written 20 months ago by cardenasca40 • updated 11 months ago by Dimitris Polychronopoulos50

Latest awards to cardenasca

Student 19 months ago, asked a question with at least 3 up-votes. For Plotting Differentially Methylated Regions

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 323 users visited in the last hour