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User: cardenasca

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cardenasca40
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Posts by cardenasca

<prev • 5 results • page 1 of 1 • next >
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bumphunter P values and significance testing
... Hi, I'm interested in the significance testing performed by bumphunter. Namely, as of now bumphunter outputs two different pvalues: 1) p.value along with the fwer and 2) p.valueArea along with the fwerArea. My understanding is that these are derived from bootstraping set at B (i.e. B=10000 for my ...
minfi bumphunter written 23 months ago by cardenasca40
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Comment: C: UcscTrack scan() error
... Hi Shuoguo, Did you ever get a solution for this? I ran into the same issue. Thanks! ...
written 2.0 years ago by cardenasca40
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Gviz - UcscTrack
... Hello, I have the following error after trying to load the Layered H3K27Ac track from UCSC genome browser. Any ideas as to why this will occur?   Thank you! > h3k27actrack <- UcscTrack(genome = gen, +                             chromosome = chr, +                             track = "Laye ...
gviz comet written 2.0 years ago by cardenasca40 • updated 14 months ago by Tiphaine Martin40
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Minfi: estimateCellCounts rgSet
... Hello, I would like to use the estimateCellCounts function without having to input an rgSet object (i.e. I only have access to betas and the genomic ratio set). Is there a way to back transform to an rgSet from the process betas or the genomic ratio set so I can use the function with the available ...
minfi 450k flowsorted.blood.450k written 2.9 years ago by cardenasca40 • updated 2.2 years ago by Habil Zare170
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Plotting Differentially Methylated Regions
... Hello, I have employed several DMR finding methods and I'm now interested in visualizing the region. I would like to visualize the individual methylation level of each CpG for every observation in the DMR (y-axis) across the genomic location (x-axis) with a loess line by levels of a factor variabl ...
minfi bumphunter 450k region written 2.9 years ago by cardenasca40 • updated 2.2 years ago by Dimitris Polychronopoulos50

Latest awards to cardenasca

Popular Question 21 months ago, created a question with more than 1,000 views. For Plotting Differentially Methylated Regions
Student 2.8 years ago, asked a question with at least 3 up-votes. For Plotting Differentially Methylated Regions

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