User: yiweihe

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yiweihe0
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Comment: C: to call differential peaks among 4 peaksets all together using DiffBind
... Hi Gord, Thank you so much for your help! I was originally run this analysis on the "samples" object exactly like what you said. However, at the dba.analyze step, I got this error:  Error in topTags(con$edgeR$db, nrow(counts)) :  Need to run exactTest or glmLRT first and I don't know exactly wha ...
written 3.6 years ago by yiweihe0
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to call differential peaks among 4 peaksets all together using DiffBind
... Hi All, I am trying to call differential peaks in pairs, each of my mutants (3 in total) from the same WT, within one single run. I firstly created a dba object of my 4 strains in triplicates: > samples 12 Samples, 419 sites in matrix (553 total):                ID Tissue Factor    Condition ...
diffbind without replicate written 3.6 years ago by yiweihe0 • updated 3.6 years ago by Gord Brown590

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