User: Rockbar

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Rockbar0
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Posts by Rockbar

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Comment: C: Same or different tools: AnnotationHub and AnnotationDbi?
... Ok, I have misunderstood so far, that AnnotationHub is using AnnotationDbi. What I meant is that both are using the same SQlite interfaces, commands, etc. and fullfill similar tasks? Sorry for my dilletante wording. Ah, I see you are one of the authors ... :-) ...
written 3.7 years ago by Rockbar0
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Same or different tools: AnnotationHub and AnnotationDbi?
... I have recently used AnnotationHub for annotation of mArray-Chip Results. But I have also found AnnotationDbi in Bioconductor. Looking into the vignettes, there seem to be no difference in the usage between both tools. What is the difference, and in which cases to use which tool? ...
annotation written 3.7 years ago by Rockbar0 • updated 3.7 years ago by Martin Morgan ♦♦ 24k
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Comment: C: AnnotationDBI Select with incomplete keys tags
... Little improvement Instead of "match" I used the "merge" function to get the GID and SYMBOL next to the values of the micorarray data. Therefore, I first had to rename the microarray genbank ID column to the same name used in the annotation DB ("ACCNUM"), so that "merge" could work. ...
written 3.7 years ago by Rockbar0
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Comment: C: AnnotationDBI Select with incomplete keys tags
... That is a great solution! Thank you very much! ...
written 3.7 years ago by Rockbar0
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AnnotationDBI Select with incomplete keys tags
... In relation to this topic https://support.bioconductor.org/p/76482/ , I also want to further annotate some CHO microarray files and extract Gene symbols from genbank IDs. The data i want to use is the following: http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30321/files/A-GEOD-13791.adf.tx ...
annotationdbi select written 3.7 years ago by Rockbar0

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