User: thomas.dobrenel

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Posts by thomas.dobrenel

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Comment: C: Error message when trying to use the 'Align' function of the 'Rsubread' package
... Hello, Indeed, you were right, targets$FileName was a factor and not a character and, as such, it couldn't run properly. I then changed the code you gave me and it worked (well, actually, Rstudio finally crashed but at least, it initiated something that I didn't have before). Thank you very much ...
written 16 months ago by thomas.dobrenel0
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Error message when trying to use the 'Align' function of the 'Rsubread' package
... Macintosh; Intel Mac OS X 10_10_5 Rstudio Version 0.99.903 R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"   Dear colleagues, I tried to use the 'Rsubread' package for doing an alignment between my RNAseq data and the index of the genome I just created and I have an error message (see below) ...
rnaseq alignment rsubread written 16 months ago by thomas.dobrenel0 • updated 16 months ago by Gordon Smyth32k
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Comment: C: cluster composition in Mfuzz package
... Thanks, I will give it a try. I also found (during this time) that it is possible to extract it by writing the lines below (although the genes are then annotated by numbers and not by their actual names): write.table(cl$cluster,"C:/Users/Thomas/Desktop/cluster.txt",sep="\t") ...
written 20 months ago by thomas.dobrenel0
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cluster composition in Mfuzz package
... Hello everybody, I am using the Mfuzz package (v. 2.30.0) for analysing the effect of a time series on gene expression and I therefore manage to cluster the genes from this dataset, based on their expression profiles. I would like to know how it is possible to actually identify which genes are part ...
mfuzz gene names cluster written 20 months ago by thomas.dobrenel0 • updated 20 months ago by Assa Yeroslaviz1.3k

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