User: vanhzh

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vanhzh0
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Posts by vanhzh

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Comment: C: How to decide on genes linked by differential binding peaks in opposite conditio
... Thank Rory Stark very much for the help! ...
written 19 days ago by vanhzh0
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How to decide on genes linked by differential binding peaks in opposite conditions.
... Dear all, I have done chip-seq and called differential binding peaks between WT and mutant conditions using "diffbind" package. I annotated the two lists of condition specific peaks to nearest genes and found that 537 genes were annotated to both lists. Here is the venn diagram: ![Venn diagram of ...
annotation written 4 weeks ago by vanhzh0 • updated 27 days ago by Rory Stark2.9k
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Comment: C: How to set a negative coverage to ZERO
... Hi Martin Morgan, Thank you very much for your help. This is exactly what I want! ...
written 3.6 years ago by vanhzh0
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How to set a negative coverage to ZERO
... Dear all,  I try to subtract one coverage from another and set the negative value in the result coverage object to 0 so that the coverage at each position would be a non-negative value.  I want all the negative values in <cov.gr2> object to be zero in this dummy example. Thanks very much for ...
coverage genomicranges written 3.6 years ago by vanhzh0 • updated 3.6 years ago by Martin Morgan ♦♦ 24k

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