User: richierocks

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richierocks10
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Posts by richierocks

<prev • 5 results • page 1 of 1 • next >
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How to submit a package hosted on Bitbucket
... I'm trying to submit a package that is hosted on Bitbucket to Bioconductor. As per the Contribution Guidelines, I opened an issue in the Bioconductor/Contributions repository, with a link to my package. The issue was auto-closed by a bot, with the message "I couldn't find a GitHub repository URL ...
package submission written 14 months ago by richierocks10 • updated 14 months ago by Martin Morgan ♦♦ 20k
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Comment: A: How to convert a GRangesList object into a GRanges object?
... Using do.call and c works, but you have to help R find the correct method method of c to use. do.call(getMethod(c, "GenomicRanges"), grl) ## GRanges object with 8 ranges and 0 metadata columns: ## seqnames ranges strand ## <Rle> <IRanges> <Rle> ## [1] chr ...
written 17 months ago by richierocks10
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How to convert a GRangesList object into a GRanges object?
... I can go from a GRanges object to a GRangesList object by splitting it. For example: (gr <- GRanges(   seqnames = paste0("chr", c(1, 2, 3, 4, 1, 2, 3, 1)),   ranges  = IRanges(c(1:8), c(16:9)),   strand = rep.int(c("+", "-"), 4) )) ## GRanges object with 8 ranges and 0 metadata columns: ##      ...
genomicranges granges grangeslist s4 written 17 months ago by richierocks10
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Comment: C: How do you run BiocCheck from a continuous integration service?
... I've filed issues with R-builder and R-AppVeyor to start the ball rolling. ...
written 18 months ago by richierocks10
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How do you run BiocCheck from a continuous integration service?
... I'd like to know how to set up continuous integration services to run BiocCheck as well as R CMD check. I'm particularly interested in SemaphoreCI and AppVeyor; answers for Travis CI are also likely to be useful to the community. For AppVeyor and Travis CI, I guess it involves updateing the appveyo ...
bioccheck continuous-integration testing written 18 months ago by richierocks10 • updated 18 months ago by Dan Tenenbaum ♦♦ 8.2k

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