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See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
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This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…
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Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…
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I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…
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