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get BM error
ensembldb
20 minutes ago • updated 3 minutes ago
Fara
• 0
1
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75
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
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Michael Love
41k • written 13 hours ago by
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▴ 40
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Citation for edgeR user guide
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50k • written 11 hours ago by
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9 hours ago • updated 50 minutes ago
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39
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15 hours ago • updated 3 hours ago
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minfi::read.metharray.exp
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1 day ago • updated 11 hours ago
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
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1 day ago
shuwangxinze1996
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DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
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▴ 10
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75
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limma-voom: Calculate the log-fold change in gene expression within a sample
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50k • written 1 day ago by
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137
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41k • written 1 day ago by
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1
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4
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129
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Error EPICv2 ChAMP
ChAMPdata
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ChAMP
updated 1 day ago by
James W. MacDonald
65k • written 5 days ago by
Mirella Aurora
• 0
0
votes
1
reply
73
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FDR via q-value
qvalue
updated 1 day ago by
James W. MacDonald
65k • written 4 days ago by
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• 0
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3
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144
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updated 18 hours ago by
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65k • written 2 days ago by
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0
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2
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141
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limma
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4 days ago • updated 1 day ago
catv
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0
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37
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Improving the design matrices vignette in RNAseq123
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1.1k
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News:
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Conference
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• 0 • written 18 months ago by
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12
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11
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179
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Trying to use enrichGO
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2 days ago • updated 14 hours ago
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▴ 10
0
votes
0
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34
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Unlocking Potential: NURS FPX Strategies and Insights
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3 days ago
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742
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Why p value inconsistent when using different number of pathway score?
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updated 2 days ago by
Robert Castelo
★ 3.3k • written 3 days ago by
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• 0
0
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0
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57
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I am trying to detect alternative splicing.
ASpli
3 days ago
Sebashish
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3
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2
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141
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Guido Hooiveld
★ 3.9k • written 4 days ago by
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▴ 10
0
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3
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95
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Error retrieving ensembl gene id using biomaRt...
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updated 4 days ago by
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65k • written 4 days ago by
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▴ 30
2
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2
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131
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OrgDb for maize
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65k • written 5 days ago by
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1
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0
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185
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6
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311
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edgeR
6 days ago • updated 1 day ago
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updated 4 days ago by
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50k • written 5 days ago by
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0
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105
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Log-cpm values from limma
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updated 4 days ago by
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50k • written 5 days ago by
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4
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FGSEA pre-ranked input in increasing order or decreasing
fgsea
5 days ago
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reply
78
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Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 5 days ago by
Alejandro Reyes
★ 1.9k • written 5 days ago by
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• 0
0
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1
reply
112
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Adding columns to DEXSeqResults object
DEXSeq
updated 5 days ago by
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★ 1.9k • written 7 days ago by
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• 0
0
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0
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84
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Warning while loading DEP package
DEP
updated 5 days ago by
shepherl
3.8k • written 5 days ago by
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• 0
0
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1
reply
84
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rlog transformation
DESeq2
updated 5 days ago by
Michael Love
41k • written 5 days ago by
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0
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1
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83
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ONT long-read RNA sequencing - data analysis options
DESeq2
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updated 5 days ago by
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93
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DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
updated 5 days ago by
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41k • written 6 days ago by
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0
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1
reply
107
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covariate with negative and positive values
DESeq2
updated 5 days ago by
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41k • written 7 days ago by
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109
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DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 5 days ago by
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★ 4.0k • written 6 days ago by
quanah.hudson
• 0
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2
replies
177
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significant difference of p-values with dream() after updating VariancePartition
variancePartition
5 days ago
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2
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123
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Error in champ.load(): The following specified files do not exist
ChAMP
6 days ago • updated 5 days ago
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1
reply
77
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Input Question for deseq.r
RSeqAn
updated 5 days ago by
ATpoint
★ 4.0k • written 6 days ago by
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• 0
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4
replies
188
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
6 days ago • updated 4 days ago
lonn
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0
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7
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233
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Methylation Analysis experiment design using Limma
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Syntaxt Error in IsorcorrectoR package with Molecule Info File
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7 days ago
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Comment: get BM error
by
Fara
• 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error
by
Mike Smith
★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Comment: How to retrieve gene ontology GO class?
by
bandconductor
• 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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