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6 days, 3 hours ago
WEHI, Melbourne, Australia
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
1 month, 3 weeks ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
2 months, 1 week ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
2 months, 4 weeks ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
3 months ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Monotonic genes in results of differential gene expression analysis
3 months, 3 weeks ago
United States
Answer: Enrichement with clusterProfiler and biomart
4 months, 4 weeks ago
United States
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
6 months, 1 week ago
EMBL Heidelberg
Answer: biomaRt not working - lazy table error
6 months, 1 week ago
WEHI, Melbourne, Australia
Answer: DecideTest vs topTAGs in edgeR
7 months, 1 week ago
Germany
Answer: ComBat_seq function in sva package does not return a matrix
7 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Batch correction and repeated measures
7 months, 2 weeks ago
Seattle, WA, United States
Answer: DataFrame Construction With Non-standard Column
8 months ago
WEHI, Melbourne, Australia
Answer: Phenotype effect - building a contrast matrix - grouping vs interaction
9 months, 1 week ago
United States
Answer: error message when I use the bsseq read.bismark command to read a genome wide cy
9 months, 1 week ago
WEHI, Melbourne, Australia
Answer: ASpli checks fail on Linux due to missing dependency to statmod
10 months ago
EMBL Heidelberg
Answer: How to access the C++ code of the function .cxx_ave_log_cpm in the aveLogCPM.def
10 months ago
United States
Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
12 months ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
1 year ago
Seattle, WA, United States
Answer: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct
1 year, 1 month ago
Germany
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
1 year, 1 month ago
United States
Answer: minfi support of illumina Infinium methylationEPIC v2.0
1 year, 2 months ago
Guangzhou
Answer: gseKEGG - no gene can be mapped (RNAseq analysis)
1 year, 2 months ago
United States
Answer: how to extract and match information of two filein R
1 year, 3 months ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
1 year, 4 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
1 year, 5 months ago
St Louis, MO
Answer: Implementation of the "original" GSEA algorithm in R
1 year, 5 months ago
United States
Answer: Too many differentially expressed miRNA with limma
1 year, 6 months ago
United States
Answer: Problem obtaining NCBI gene IDs from Ensembl version 107
1 year, 6 months ago
Heidelberg
Answer: Is there any description available for KEGG Pathway Edge Types
1 year, 7 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
1 year, 9 months ago
United States
Answer: Convert an R data.frame to a bed file in R
1 year, 9 months ago
Australia/Melbourne/Olivia Newton-John …
Answer: cellCounts() function floating point error
1 year, 9 months ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
1 year, 10 months ago
United States
Answer: Large difference between lfcshrink and non-shrunk DESeq2 results
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