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0
votes
1
answer
8
views
1
answer
DESeq2 heatmap and rlog transformed values
deseq2 written 5 hours ago by Morris • 0 • updated 2 hours ago by Michael Love ♦ 25k
1
vote
1
answer
22
views
1
answer
ggbio - change transcript label sizes
annotation ggbio written 6 hours ago by Kevin Blighe • 160 • updated 3 hours ago by Michael Lawrence ♦ 11k
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1
answer
62
views
1
answer
Correct way to split and unsplit a DataFrame
iranges s4vectors written 1 day ago by Michael Steinbaugh • 30 • updated 11 hours ago by Michael Lawrence ♦ 11k
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1
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62
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1
answer
Phyloseq to DESeq2 Help
deseq2 written 2 days ago by crharris • 0 • updated 1 day ago by Michael Love ♦ 25k
0
votes
1
answer
39
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1
answer
Can we control colors for two different colAtributes
diffbind plot plotheatmap written 1 day ago by researcher • 0 • updated 1 day ago by Rory Stark • 2.8k
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1
answer
70
views
1
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Comparison between two different group's pathway analysis results
gage deseq2 pathway analysis written 1 day ago by tntntntntn • 0 • updated 1 day ago by mikhael.manurung • 160
2
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1
answer
58
views
1
answer
Finding the proper universe for enrichGO and enrichKEGG - only the genes that are annotated in those ontologies
chipseeker written 1 day ago by endrebak85 • 30
0
votes
1
answer
30
views
1
answer
GUIDEseq Error in GAlignmentPairs
galignmentpairs guideseq written 2 days ago by tomas.rodriguez • 0 • updated 1 day ago by Julie Zhu • 4.0k
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33
views
0
answers
Proteomics data analysis with DEP no replicates
proteomics limma statistics dep written 2 days ago by tatabox • 0
0
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1
answer
27
views
1
answer
NanoStringDiff correction for variation between patient
glm gene expression nanostringdiff written 2 days ago by Guillaume Robert • 0 • updated 2 days ago by James W. MacDonald ♦ 50k
0
votes
1
answer
96
views
1
answer
DiffBind dba error
diffbind error R dba written 10 weeks ago by annika-helverson • 0 • updated 2 days ago by Rory Stark • 2.8k
0
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1
answer
129
views
1
answer
DiffBind dba.count error pv$merge(bed): attempt to apply non-function
diffbind written 12 weeks ago by chadnewton • 0 • updated 2 days ago by Rory Stark • 2.8k
0
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1
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70
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1
answer
diffbind dba.plotvolcano bLabels option use genames instead of numbers
diffbind written 8 weeks ago by theodore.georgomanolis • 0 • updated 2 days ago by Rory Stark • 2.8k
0
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1
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54
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1
answer
How can we increase the width of the correlation plot generated by DiffBind
diffbind plot(dbdata) written 5 weeks ago by researcher • 0 • updated 2 days ago by Rory Stark • 2.8k
0
votes
1
answer
51
views
1
answer
DESeq2 s-value threshold for FSOS events
deseq2 written 2 days ago by Homer • 0 • updated 2 days ago by Michael Love ♦ 25k
0
votes
1
answer
70
views
1
answer
diffbind dba object subset peak regions
diffbind written 19 days ago by Vince Schulz • 60 • updated 2 days ago by Rory Stark • 2.8k
0
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1
answer
56
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1
answer
Diffbind problems with negative widths in IRanges and chromosome ranges after dba.report
iranges diffbind written 18 days ago by akutsch • 0 • updated 2 days ago by Rory Stark • 2.8k
0
votes
1
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71
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1
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How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
diffbind plot heatmap.3 written 3 days ago by researcher • 0 • updated 2 days ago by Rory Stark • 2.8k
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1
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38
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1
answer
Problem with AnnotationHub after crash during first download of metadata
annotationhub written 2 days ago by konstantinos.bogias • 10 • updated 2 days ago by Martin Morgan ♦♦ 23k
1
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0
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39
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0
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Using `catchSalmon()` to import Salmon counts quantified using a decoy-aware transcriptome index
edger salmon written 2 days ago by konstantinos.bogias • 10
0
votes
1
answer
38
views
1
answer
DESeq2 Wald test p-values
deseq2 written 2 days ago by Homer • 0
0
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1
answer
44
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1
answer
package DESeqDataSet is not available for R version 3.6.1
deseq2 written 3 days ago by HAILYTR • 0 • updated 2 days ago by Martin Morgan ♦♦ 23k
0
votes
0
answers
28
views
0
answers
(Closed) filter based on variant annotation
variant annotation topmedpipeline assoctestaggregate written 3 days ago by winstondunnmd • 0 • updated 3 days ago by Martin Morgan ♦♦ 23k
0
votes
0
answers
18
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0
answers
MBDseq analysis using qsea package
qsea mbdseq written 3 days ago by LNathanson • 0
0
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0
answers
33
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0
answers
Data input for aracne2regulon function in viper package
viper written 3 days ago by maya.kappil • 10
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