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0
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0
answers
20
views
0
answers
DEXseq plot, determin the EU Fold change
dexseq plotdexseq written 4 hours ago by layal8785 • 0
0
votes
0
answers
9
views
0
answers
Missing value imputation
msnbase written 1 hour ago by kamal.fartiyal84 • 0
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votes
1
answer
12
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 1 hour ago by shawn.w.foley • 0 • updated 1 hour ago by assaron • 100
0
votes
0
answers
10
views
0
answers
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio written 2 hours ago by yog312 • 0
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0
answers
13
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0
answers
edgeR DE gene calculation problem
edger written 2 hours ago by jw24 • 0
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0
answers
12
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0
answers
problem with cummeRbund using latest R version
cummerbund written 3 hours ago by mmateos • 0
0
votes
0
answers
14
views
0
answers
as.data.table method for GRanges modifies the original object by reference
genomicranges data.table written 3 hours ago by alex.gos90 • 0
11
votes
1
answer
117
views
5 follow
1
answer
News: markdown is coming to the support site
news markdown written 5 days ago by Lucas Schiffer • 140
0
votes
0
answers
31
views
0
answers
Sparsity plot and how that indicates a model fit to negative binomial distribution
deseq2 written 6 hours ago by tg369 • 0
2
votes
3
answers
76
views
3
answers
SomaticSignatures package : motifMatrix function trouble
somaticsignatures written 4 weeks ago by guillaume.dachy • 0
0
votes
1
answer
56
views
1
answer
[MnnCorrect] In case of known subpopulations
rnaseq scran single-cell mnncorrect written 1 day ago by Jens Preussner • 10
0
votes
2
answers
51
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2
answers
DESeq2 - PCAplot differs between rlog and vsd transformation
deseq2 rlog transformation vsd plotpca written 1 day ago by Jane Merlevede • 90
0
votes
1
answer
54
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 1 day ago by arubio • 0 • updated 10 hours ago by Gordon Smyth ♦ 30k
0
votes
3
answers
58
views
3
answers
Load saved RangedSummarizedExperiment as Deseq2 dataset
rnaseq deseq2 hdf5 rangedsummarizedexperiment written 1 day ago by Jakob Petereit • 0
0
votes
1
answer
48
views
1
answer
Extracting subclusters from original data
metabolomics complexheatmap written 18 hours ago by Mina • 0 • updated 13 hours ago by sina.nassiri • 40
0
votes
1
answer
61
views
1
answer
DEXseq for larger samples
dexseq written 2 days ago by Peter • 0 • updated 15 hours ago by Gordon Smyth ♦ 30k
1
vote
1
answer
80
views
1
answer
normalization affects drastically limma-voom + sva results
normalization sva limma-voom written 1 day ago by aec • 30 • updated 19 hours ago by Gordon Smyth ♦ 30k
3
votes
3
answers
73
views
3
answers
DESeq function taking too long
rnaseq deseq deseq2 factor written 1 day ago by sup230 • 0 • updated 23 hours ago by Peter Langfelder • 1.2k
1
vote
1
answer
56
views
1
answer
Error from eBayes in limma package
limma error ebayes written 1 day ago by calen.p.ryan • 0 • updated 1 day ago by James W. MacDonald ♦ 43k
0
votes
0
answers
33
views
0
answers
Trouble Installing cytoUtils
cytoutils written 1 day ago by justinyi10 • 0
2
votes
4
answers
139
views
4
answers
Recent build and parsing error in pathview
kegggraph gage pathview pathway pathway analysis written 6 days ago by Luo Weijun • 1.4k
0
votes
1
answer
59
views
1
answer
Bioconductor Conference in 2018?
conference date written 1 day ago by fannin • 0 • updated 1 day ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
52
views
1
answer
Applying sva is compatible with limma duplicateCorrelation?
sva duplicatecorrelation limma-voom written 1 day ago by aec • 30 • updated 1 day ago by sina.nassiri • 40
0
votes
0
answers
39
views
0
answers
Job: Job: Lecturer/Senior Lecturer/Reader in Statistics (including Computational Biology) at The University of St Andrews
jobs job written 1 day ago by Andy Lynch • 70
0
votes
0
answers
41
views
0
answers
Single Sample GSEA (ssGSEA) and dynamic range of expression
gsva piano ssgsea egsea written 1 day ago by sina.nassiri • 40
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