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1
vote
1
answer
10
views
1
answer
Normalized counts access in DESeq2 R: with and without batch
normalization edger deseq2 written 2 hours ago by Matan G. • 0 • updated 2 hours ago by Michael Love ♦ 26k
0
votes
1
answer
52
views
1
answer
How to use ENCprime via coRdon with a custom background sequence set?
software dna bias codon usage written 2 days ago by jol.espinoz • 20 • updated 2 hours ago by anamaria • 0
0
votes
0
answers
11
views
0
answers
Batch correction in Linear Models for methylation data
methylation combat linear models batch correction aic written 3 hours ago by lucasmiranda42 • 0
0
votes
1
answer
29
views
1
answer
DEseq2 design matrix for paired samples with batch effects
deseq2 written 12 hours ago by cylsae • 0 • updated 12 hours ago by Michael Love ♦ 26k
2
votes
2
answers
54
views
2
answers
Understanding voom behavior when model matrix is used with/without intercept for a continuous variable
rnaseq limma voom model.matrix intercept written 17 hours ago by atakanekiz • 30 • updated 14 hours ago by Gordon Smyth ♦ 39k
2
votes
1
answer
36
views
1
answer
Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
annotation bsgenome mmul10 written 18 hours ago by P Darakjian • 40 • updated 17 hours ago by James W. MacDonald ♦ 52k
0
votes
1
answer
20
views
1
answer
ggbio tracks not aligned when legend present in one track
ggbio written 18 hours ago by Janet Young • 740 • updated 17 hours ago by Michael Lawrence ♦ 11k
0
votes
1
answer
26
views
1
answer
Extract sample information from own BAM files using SGSeq
sgseq written 1 day ago by anjanhazra • 0 • updated 18 hours ago by Leonard Goldstein • 110
0
votes
1
answer
44
views
1
answer
DESeq2 DE analysis of two samples conditioned on a shared reference
deseq2 written 21 hours ago by amin.zzia • 0 • updated 19 hours ago by Michael Love ♦ 26k
0
votes
2
answers
51
views
2
answers
Error while installing RforMassSpectrometry
software error written 1 day ago by fred • 0 • updated 1 day ago by Laurent Gatto ♦ 1.2k
1
vote
1
answer
64
views
1
answer
WGCNA parallelization multi thread for blockwiseModules and TOMsimilarity
wgcna parallelization written 1 day ago by bioming • 10 • updated 1 day ago by Peter Langfelder • 2.3k
1
vote
1
answer
46
views
1
answer
Biostrings dependency cause new warnings on CRAN packages (base function rgb not found)
biostrings written 1 day ago by james.dalgleish • 30 • updated 1 day ago by Martin Morgan ♦♦ 24k
0
votes
0
answers
856
views
0
answers
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte (updated)
genetics job statistics R ngs genomics written 17 months ago by Luo Weijun • 1.5k
0
votes
0
answers
362
views
0
answers
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
job statistics R ngs genomics big data written 10 months ago by Luo Weijun • 1.5k
0
votes
1
answer
42
views
1
answer
Nested Random Effect in LIMMA: Is It Possible?
limma edger rna-seq random effects written 1 day ago by mjgarcia • 0 • updated 1 day ago by Gordon Smyth ♦ 39k
2
votes
2
answers
50
views
2
answers
featureCount error - cannot identify gene_id
rsubread dexseq software error featurecount written 2 days ago by seung.ho.steven.choi • 0 • updated 1 day ago by Yang Liao • 200
0
votes
0
answers
56
views
0
answers
[DSS] callDMR - dis.merge option does not seem to be working
dss bug troubleshooting calldmr written 1 day ago by matthew.kearney • 0
0
votes
1
answer
60
views
1
answer
DESeq2 counts function not working
rnaseq deseq deseq2 written 1 day ago by mrfossl97 • 0 • updated 1 day ago by Michael Love ♦ 26k
0
votes
2
answers
73
views
2
answers
Question on Design formula for DESeq2
rnaseq deseq2 written 1 day ago by Tim • 0 • updated 1 day ago by Michael Love ♦ 26k
0
votes
1
answer
65
views
1
answer
DESeq2: experiment with two genotypes and three conditions
deseq2 written 2 days ago by efratk • 0 • updated 1 day ago by Michael Love ♦ 26k
1
vote
1
answer
56
views
1
answer
tximport errors with h5 and tsv files
tximport kallisto written 2 days ago by sp21 • 0 • updated 2 days ago by Michael Love ♦ 26k
0
votes
1
answer
35
views
1
answer
QuasR::qAlign: how to specify maximum allowed number of mismatches and output all alignments
quasr written 2 days ago by Julie Zhu • 4.1k • updated 2 days ago by Hotz, Hans-Rudolf • 400
0
votes
0
answers
44
views
0
answers
Library for Node Influence package
graph gene regulatory network node influence gene ranking written 2 days ago by omarrafiqued • 50
0
votes
1
answer
45
views
1
answer
How to change ensembl ids to gene names before analysis using count table?
ensemblid written 2 days ago by rajeshparmar4 • 0 • updated 2 days ago by Michael Love ♦ 26k
0
votes
0
answers
27
views
0
answers
JunctionSeq producing strangely large effect sizes for certain exon counting bins
rnaseq dexseq splicing junctionseq written 2 days ago by stuart • 10
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