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0
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1
answer
14
views
1
answer
Deseq: What does "BaseMean" mean?
deseq2 written 2 hours ago by 183227851 • 0 • updated 2 hours ago by Guido Hooiveld • 2.3k
1
vote
1
answer
68
views
1
answer
How to filter overlaping EBImage objects?
ebimage written 12 days ago by atbest09 • 0 • updated 2 hours ago by Wolfgang Huber ♦ 13k
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5
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Error in data.frame for limmaCtData function
limma software error data.frame written 5 hours ago by azmir004 • 0
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answers
5
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2 written 5 hours ago by trebbiano • 0
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votes
1
answer
39
views
1
answer
ChIPQC: error during annotation compilation
chipqc written 2 days ago by hdingwall • 0 • updated 7 hours ago by Thomas Carroll • 400
2
votes
2
answers
38
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2
answers
Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma rna-seq repeated measures mixed model written 14 hours ago by mikhael.manurung • 0 • updated 8 hours ago by Gordon Smyth ♦ 35k
2
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1
answer
68
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1
answer
Correct formulation of contrasts of interest regarding an RNA-Seq gene expression analysis with edgeR
rnaseq edger design and contrast matrix multifactorial design written 2 days ago by fotakisg • 0 • updated 12 hours ago by Aaron Lun • 21k
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0
answers
26
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some errors in cytofWorkflow2 description
cytofworkflow written 2 days ago by o.hunewald • 0 • updated 12 hours ago by James W. MacDonald ♦ 47k
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1
answer
22
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1
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Issue using ballgown
genomeinfodb software error ballgown genomeinfodbdata written 1 day ago by dualeahmed • 0 • updated 12 hours ago by James W. MacDonald ♦ 47k
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1
answer
37
views
1
answer
Including batch effects in the differential expression of gene analysis
ballgown new tuxedo pipleine written 1 day ago by amy16 • 0 • updated 12 hours ago by James W. MacDonald ♦ 47k
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1
answer
31
views
1
answer
DESEQ2 / Phyloseq contrasts no longer work as before following update
phyloseq deseq2 written 13 hours ago by eoin • 0 • updated 13 hours ago by Michael Love ♦ 19k
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votes
1
answer
28
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1
answer
CopywriteR - low coverage-regions display very low numbers
copynumber copywriter written 23 hours ago by magdaaverte • 0 • updated 14 hours ago by t.kuilman ♦ 140
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votes
1
answer
24
views
1
answer
Minfi read.metharray.sheet error
dataimport minfi minfidata methylation missmethyl written 1 day ago by moldach • 10 • updated 17 hours ago by James W. MacDonald ♦ 47k
1
vote
1
answer
31
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1
answer
Warning using feuture count related to GTF file
featurecounts written 19 hours ago by roghaiyeh.safari • 0 • updated 17 hours ago by James W. MacDonald ♦ 47k
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votes
1
answer
36
views
1
answer
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chipseq chippeakanno R written 18 hours ago by 94133 • 0 • updated 18 hours ago by Ou, Jianhong • 1.1k
1
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0
answers
28
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0
answers
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2 written 18 hours ago by Lescai, Francesco • 370
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0
answers
20
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CF Pseudomonas database search for AguA gene deletions
bioconductor written 1 day ago by smith493 • 0
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votes
1
answer
25
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1
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Concatenate a list of genomic ranges
genomicranges granges R written 1 day ago by g.k • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
1
vote
1
answer
26
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1
answer
Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
kegg rnaseq_analysis nonmodel species written 1 day ago by laural710 • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
1
vote
2
answers
148
views
2
answers
Trying to map nucleotide position from a transcript to genomic location
mirna genomicfeatures mapfromtranscripts written 6 days ago by Victoria Perreau • 20 • updated 1 day ago by Valerie Obenchain ♦♦ 6.6k
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0
answers
35
views
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answers
weired output with featurecount
featurecounts star written 1 day ago by roghaiyeh.safari • 0
2
votes
1
answer
49
views
1
answer
RNA-seq time course experiment - LRT design hep
timecourse deseq2 lrt written 1 day ago by maithex • 0
0
votes
1
answer
46
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1
answer
DESerq2 older releases
deseq2 release written 2 days ago by Eleni Christodoulou • 150 • updated 1 day ago by Michael Love ♦ 19k
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answers
28
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answers
GDC server down, try to use this package later
tcgabiolinks written 1 day ago by swarajgaikwad15 • 0
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0
answers
39
views
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answers
uniprot.ws install error
software error written 2 days ago by ghmdsr • 0
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