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0
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0
answers
4
views
0
answers
DiffBind minOverlap parameter
diffbind job minoverlap consensus peakset written 57 minutes ago by mademoisElle • 0
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votes
2
answers
55
views
2
answers
Recommended Read Support Filter for Breakends
structuralvariantannotation written 26 days ago by Dario Strbenac • 1.5k • updated 1 hour ago by Daniel Cameron • 0
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3
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answers
News: Buy Samsung cartridges of different models by contacting Rastogi cartridges
news compatible cartridges samsung printer cartridges premium toner cartridges written 1 hour ago by rc387409 • 0
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answers
15
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0
answers
Error in fitNullMM from GENESIS package on highly-related samples
genesis written 9 hours ago by Corey.Cox • 0
2
votes
1
answer
39
views
1
answer
could not find function "plotQC" in scater package
scater written 15 hours ago by moldach • 20 • updated 15 hours ago by Aaron Lun • 25k
0
votes
1
answer
57
views
1
answer
Exclude interaction terms from the design
deseq2 statistics modelling written 1 day ago by polyptwo • 0 • updated 17 hours ago by Michael Love ♦ 25k
0
votes
1
answer
26
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1
answer
Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
iranges genomicranges written 1 day ago by bioinagesh • 0 • updated 18 hours ago by James W. MacDonald ♦ 51k
2
votes
1
answer
50
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1
answer
DESeq2: design = ~1 For Normalisation Only.
rnaseq normalization limma deseq2 tcga written 22 hours ago by Alex Greenshields-Watson • 0 • updated 19 hours ago by Michael Love ♦ 25k
2
votes
2
answers
78
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2
answers
Filtering counts in SummarizedExperiment
diffbind summarizedexperiment matrix rangedcounts written 14 days ago by rbronste • 60 • updated 19 hours ago by Rory Stark • 2.9k
1
vote
2
answers
53
views
2
answers
in diffbind dba.peakset what is the meaning of minOverlap?
diffbind chip-seq dba.peakset written 16 days ago by theodore.georgomanolis • 0 • updated 20 hours ago by Rory Stark • 2.9k
0
votes
1
answer
61
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1
answer
dba.count filter example in manual
diffbind written 11 days ago by rbronste • 60 • updated 20 hours ago by Rory Stark • 2.9k
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votes
1
answer
51
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1
answer
Diffbind with age as blocking factor
diffbind chip-seq written 11 days ago by melnuesch • 10 • updated 20 hours ago by Rory Stark • 2.9k
0
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0
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36
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0
answers
Error: installation of package org.Mm.eg.db had non-zero exit status
orgdb written 23 hours ago by zhangdengwei • 0
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0
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16
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Error in validObject(.Object) : invalid class "CompressedGRangesList" object
software error written 1 day ago by yaozhan88 • 0 • updated 1 day ago by James W. MacDonald ♦ 51k
0
votes
1
answer
32
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1
answer
Biased results of DESeq2 LRT (Group name order)
deseq2 written 1 day ago by minyoungcho93 • 0 • updated 1 day ago by Michael Love ♦ 25k
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votes
0
answers
18
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0
answers
crlmm support for Illumina arrays with no annotation package?
annotation crlmm qcarray written 1 day ago by deanpett • 0
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0
answers
23
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0
answers
how to a load workflow package
cytofworkflow written 1 day ago by jianjunchencn • 0
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votes
1
answer
41
views
1
answer
What is lfcSE and how is it calculated?
deseq2 standarderror written 1 day ago by lizzid • 0
0
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0
answers
26
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0
answers
Very variable samples vs similar samples in the same dataset
edger deseq2 written 1 day ago by eduardogccm • 0
2
votes
1
answer
35
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1
answer
Docker container with bioconductor and devtools
docker written 1 day ago by raven • 0 • updated 1 day ago by shepherl ♦♦ 1.6k
0
votes
1
answer
59
views
1
answer
How to create manhattan plot with DESeq2
deseq2 rna seq mahattan plot written 1 day ago by adeler001 • 0 • updated 1 day ago by Michael Love ♦ 25k
0
votes
1
answer
28
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1
answer
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
geoquery oligo expressionset written 1 day ago by salamandra • 0 • updated 1 day ago by James W. MacDonald ♦ 51k
0
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28
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answers
News: Important Deadlines for RELEASE
news release devel deadline written 1 day ago by shepherl ♦♦ 1.6k • updated 1 day ago by Martin Morgan ♦♦ 23k
2
votes
3
answers
121
views
3
answers
Error in running ATACseqQC
software error written 11 days ago by Fei Liu • 0
0
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0
answers
40
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0
answers
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
annotation software error written 2 days ago by 1225384383 • 0 • updated 2 days ago by Martin Morgan ♦♦ 23k
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