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0
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0
answers
57
views
0
answers
Rbowtie fails to compile using spack with "error: reference to Byte is ambiguous"
rbowtie software error written 2 days ago by Pariksheet Nanda • 110
0
votes
0
answers
65
views
0
answers
Adjusting the size of the visual output from cluster profiler
clusterprofiler heatmap goanalysis written 11 hours ago by anthony.nash • 0
1
vote
1
answer
38
views
1
answer
Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
proteomics limma written 23 hours ago by JMallory • 0 • updated 22 hours ago by Aaron Lun • 23k
0
votes
2
answers
71
views
2
answers
How to subset data
deseq2 written 1 day ago by sarah.whiteley • 0 • updated 1 day ago by swbarnes2 • 170
1
vote
1
answer
46
views
1
answer
Visualizing Orthologs and Paralogs genes
circos orthologs paralogs porthomcl visualizing written 5 days ago by mictadlo • 0 • updated 1 day ago by James W. MacDonald ♦ 50k
0
votes
1
answer
43
views
1
answer
News: Initial List of Deprecated Packages Bioc 3.10
annotation experimentdata news software release deprecation written 12 days ago by shepherl ♦♦ 1.4k
0
votes
0
answers
26
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0
answers
error when running SDA on exampleSE2
software error written 1 day ago by diana.hendrickx • 0
0
votes
1
answer
67
views
1
answer
Help: how to use wilcox.test with a SummarizedExperiment object?
summarizedexperiment wilcoxon-mann-whitney test written 1 day ago by longsong • 0 • updated 1 day ago by James W. MacDonald ♦ 50k
1
vote
0
answers
62
views
0
answers
Scan error using biomart getBM with version option and host set
biomart ensembl getbm written 1 day ago by Marc Saric • 70
0
votes
1
answer
46
views
1
answer
Error installing WGCNA for R 3.6 in RStudio Version 1.2.1335
wgcna installation error compilation written 1 day ago by rm1238 • 0 • updated 1 day ago by Peter Langfelder • 1.9k
2
votes
1
answer
51
views
1
answer
scater::runPCA() errors on DelayedMatrix (DelayedArray:::.check_Ops_vector_arg_length)
scater delayedarray biocsingular written 2 days ago by kevin.rue • 220 • updated 1 day ago by Aaron Lun • 23k
2
votes
1
answer
73
views
1
answer
Something wrong with the BioMart server
biomart written 2 days ago by Dan Liang • 0 • updated 1 day ago by Mike Smith • 3.6k
1
vote
1
answer
55
views
1
answer
Adjusting for known covariates before coexpression analysis with WGCNA
sva wgcna coexpression written 2 days ago by mikhael.manurung • 50 • updated 2 days ago by Peter Langfelder • 1.9k
3
votes
1
answer
49
views
1
answer
Mouse genes not mapping to Human orthologs
biomart written 3 days ago by komal.rathi • 80
3
votes
1
answer
66
views
1
answer
'biomaRt expected a character string of length 1' error with getBM and reseq mrna filer
biomart written 2 days ago by laurenz.holcik • 0 • updated 2 days ago by Mike Smith • 3.6k
0
votes
1
answer
55
views
1
answer
DESeq2 Multi-Factor anlaysis
deseq2 multi-factor written 2 days ago by m.harrison • 0 • updated 2 days ago by Michael Love ♦ 23k
2
votes
1
answer
36
views
1
answer
exonicParts vs. disjoinExons inconsistency in usage for DEXSeq - bug?
dexseq written 3 days ago by story.benjamin • 10 • updated 2 days ago by Hervé Pagès ♦♦ 13k
0
votes
0
answers
54
views
0
answers
Monocle Error Question
monocle written 2 days ago by Mike • 10
3
votes
2
answers
71
views
2
answers
How does limma calculate the log2fc?
limma differential expression time-course analysis written 3 days ago by mcfarn1 • 0 • updated 2 days ago by Gordon Smyth ♦ 37k
1
vote
3
answers
63
views
3
answers
Error in sizeRestrictedClusterMerge: replace is not a multiple of replacement length
wgcna written 8 days ago by Lluís Revilla Sancho • 470 • updated 3 days ago by Peter Langfelder • 1.9k
0
votes
0
answers
27
views
0
answers
Run crlmm in R to analyze the omni5 dataset
software error written 3 days ago by chuanjiao6 • 0
0
votes
0
answers
24
views
0
answers
genotype from oncoscan
crlmm genotype oncoscan written 3 days ago by sanju • 0
0
votes
0
answers
31
views
0
answers
Phyloseq to metagenomeSeq
limma metagenomeseq written 3 days ago by nabiyogesh • 0
3
votes
1
answer
103
views
1
answer
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsgate written 4 days ago by k.teijgeler • 0
0
votes
1
answer
37
views
1
answer
Diffbind affinity based analysis
chipseq diffbind affinity analysis differentially bound sites occupancy analysis written 3 days ago by rapmic • 0 • updated 3 days ago by Rory Stark • 2.8k
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