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2
votes
1
answer
25
views
1
answer
Decide normalisation method in RUVseq for RNAseq data
rnaseq normalization edger ruvseq ruvnormalize written 3 hours ago by manish20072013 • 0 • updated 2 hours ago by davide risso • 370
1
vote
1
answer
38
views
1
answer
RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates written 4 hours ago by alakatos • 70 • updated 4 hours ago by Ryan C. Thompson ♦ 5.7k
0
votes
1
answer
23
views
1
answer
Want help in limma analysis
limma written 8 hours ago by anjan.payra • 0 • updated 5 hours ago by Aaron Lun • 15k
0
votes
1
answer
41
views
1
answer
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio written 21 hours ago by Bogdan • 460 • updated 7 hours ago by Valerie Obenchain ♦♦ 6.1k
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0
answers
20
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0
answers
Test for differential variability with missMethyl (DiffVar) using block design
limma block design matrix missmethyl diffvar written 9 hours ago by Simone • 170
0
votes
0
answers
25
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0
answers
How to test or estimate differential TSS/promoter usage/expression based on RNA-seq data only
rna-seq salmon tss tximport differential isoform usage written 9 hours ago by Steffen Heyne • 0
1
vote
1
answer
37
views
1
answer
Error creating DESeqDataSet from "airway" SummarizedExperiment
genomicranges deseq2 written 13 hours ago by Levi Waldron • 310 • updated 12 hours ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
30
views
1
answer
Problem in merging data frames
merge merge data frames written 14 hours ago by shadhiksk • 0 • updated 13 hours ago by Haiying.Kong • 50
0
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0
answers
26
views
0
answers
Diffbind: Input cluster specifically with one of my Histone Mark
diffbind written 13 hours ago by ZheFrench • 10
5
votes
1
answer
67
views
1
answer
R: error while reading .h5 files from R using rdhf5 package
rhdf5 R hdf5 written 1 day ago by him4u324 • 0 • updated 14 hours ago by Mike Smith • 1.8k
1
vote
2
answers
75
views
2
answers
Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks written 21 days ago by david.tieri • 10 • updated 14 hours ago by conico • 0
0
votes
0
answers
23
views
0
answers
Vertically Flipped Sashimi Plot
gviz sashimi plot written 16 hours ago by Dario Strbenac • 1.3k
2
votes
2
answers
60
views
2
answers
No annotation for single SNPs
variantannotation snps ucsc txdb.hsapiens.ucsc.hg19.knowngene written 3 days ago by Lna • 0 • updated 18 hours ago by Valerie Obenchain ♦♦ 6.1k
1
vote
2
answers
69
views
2
answers
extracting cluster data after using flowpeaks
flowpeaks written 6 days ago by shadhiksk • 0
4
votes
1
answer
50
views
1
answer
Annotation Database for ChIPpeakAnno
chippeakanno written 1 day ago by Haiying.Kong • 50 • updated 1 day ago by Ou, Jianhong • 990
2
votes
1
answer
50
views
1
answer
DESeq2 Dispersion Estimation after Applying Customized Normalization Factors
deseq2 written 1 day ago by dustar1986 • 0
1
vote
1
answer
28
views
1
answer
edgeR reinstall failure: edgeR.rdb' is corrupt
edger package installation written 1 day ago by afreedman405 • 0 • updated 1 day ago by Aaron Lun • 15k
0
votes
2
answers
39
views
2
answers
Does fgsea order the stats argument?
fgsea written 1 day ago by rubi • 70
0
votes
1
answer
44
views
1
answer
drawing chemical from smile 2D/3D
chemminer written 4 days ago by Stane • 0 • updated 1 day ago by Thomas Girke • 1.6k
0
votes
3
answers
65
views
3
answers
KEGGgraph warning: "In structure(x$children, class = "XMLNodeList") :"
kegggraph written 15 days ago by AR3513 • 0
0
votes
3
answers
37
views
3
answers
question about subsetting SGSeq results by different categories of splice events
sgseq written 1 day ago by amanda.joy.price • 0 • updated 1 day ago by Leonard Goldstein • 20
0
votes
2
answers
44
views
2
answers
SomaticSignatures package : motifMatrix function trouble
somaticsignatures written 1 day ago by guillaume.dachy • 0 • updated 1 day ago by Julian Gehring • 1.2k
0
votes
0
answers
34
views
0
answers
Color specific genes in cummeRbund scatterplot
cummerbund written 1 day ago by markus.nevil • 0
0
votes
1
answer
39
views
1
answer
how to apply correctly geneSetTest on deseq2 data results
limma deseq2 written 1 day ago by jarod_v6@libero.it • 20 • updated 1 day ago by Michael Love ♦ 12k
0
votes
1
answer
63
views
1
answer
How to perform DESeq2 based on paired sample test?
rnaseq deseq2 written 1 day ago by zhxiaokang • 0 • updated 1 day ago by Michael Love ♦ 12k
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