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2
votes
1
answer
17
views
1
answer
Affy's exprs not working.. intensity works..
affy intensity exprs written 5 hours ago by elmira.amiri • 0 • updated 4 hours ago by James W. MacDonald ♦ 46k
0
votes
0
answers
11
views
0
answers
Analysis guidance for data inclusion in deseq2 analysis: data subsets vs contrasts
rnaseq deseq2 written 6 hours ago by chris • 0
0
votes
0
answers
6
views
0
answers
Help using 'handler' function with bptry()
biocparallel error handling written 6 hours ago by Peter Hickey • 350
0
votes
0
answers
17
views
0
answers
Using DESeq2 normalisation method on a matrix without sample information
deseq2 written 7 hours ago by user31888 • 30
0
votes
1
answer
18
views
1
answer
Determination of Hypo- or Hyper- methylation
bsseq dmrseq written 9 hours ago by Bruno Verstraeten • 0 • updated 9 hours ago by James W. MacDonald ♦ 46k
2
votes
2
answers
54
views
2
answers
Tximport of quasi-alignment-based RNAseq quantification (Salmon) for use with edgeR
rnaseq edger salmon tximport written 9 hours ago by martin.weihrauch • 10 • updated 9 hours ago by Aaron Lun • 19k
1
vote
1
answer
38
views
1
answer
Why DESeq2 and edgeR give different results?
rnaseq edger deseq2 bioconductor differential gene expression written 10 hours ago by Biologist • 60 • updated 10 hours ago by Michael Love ♦ 17k
0
votes
1
answer
56
views
1
answer
CSAW Spike In Normalization: Error in .local(object, ...) : library sizes of 'se.out' and 'object' are not identical
software error R bioconductor chip-seq csaw written 23 hours ago by 94133 • 0 • updated 11 hours ago by Aaron Lun • 19k
0
votes
1
answer
39
views
1
answer
How can I show certain gene's expression in clusters by sc3
sc3 written 18 hours ago by qq1493438060 • 0 • updated 14 hours ago by Vladimir Kiselev • 130
1
vote
2
answers
36
views
2
answers
BiomaRt - hsapiens dataset from Ensembl_Mart_Ensembl not recognised by R
biomart written 7 days ago by alisha.aman • 0 • updated 15 hours ago by Mike Smith • 2.7k
0
votes
1
answer
44
views
1
answer
Question in applying DESeq2
deseq2 written 1 day ago by krisd3v • 0 • updated 21 hours ago by Michael Love ♦ 17k
0
votes
1
answer
52
views
1
answer
DESeq2 design error message with ordered factor but not numeric
deseq2 written 1 day ago by chris • 0 • updated 1 day ago by Michael Love ♦ 17k
0
votes
0
answers
38
views
0
answers
Rsubread install fails, "unable to load shared object Rsubread.so"
rsubread written 1 day ago by jet456 • 0
0
votes
0
answers
14
views
0
answers
GAGE function and the same.dir option
gage gene set testing written 1 day ago by Aurora • 10
1
vote
0
answers
27
views
0
answers
Discrepancies between sradb, sraruninfo
sradb written 1 day ago by langmea • 10
0
votes
0
answers
40
views
0
answers
Beginner & HowTo-flowCore-Example
flowcore written 1 day ago by ms-leipzig • 0 • updated 1 day ago by James W. MacDonald ♦ 46k
3
votes
1
answer
64
views
1
answer
help DESeq2 model design
deseq2 R written 1 day ago by euge.eugenio • 20 • updated 1 day ago by Michael Love ♦ 17k
0
votes
1
answer
20
views
1
answer
cannot reproduce biomaRt vignette
biomart written 1 day ago by karl.nordstroem • 0 • updated 1 day ago by Mike Smith • 2.7k
2
votes
0
answers
75
views
0
answers
Relabelling objects - EBImage
ebimage image analysis image processing written 3 days ago by Mathieu Gendarme • 10
1
vote
0
answers
18
views
0
answers
Arrange Gviz plotTracks() figure and basic R plot on a canvas
gviz gviz-package written 1 day ago by izzy.yichao.cai • 10
5
votes
1
answer
60
views
1
answer
Log2FoldChange shrinkage method in DESeq2
deseq2 lfcshrink apeglm written 2 days ago by Benjamin Ostendorf • 30 • updated 1 day ago by Michael Love ♦ 17k
0
votes
1
answer
44
views
1
answer
Is C adjusted for purity?
purecn adjusted c written 1 day ago by twtoal • 0 • updated 1 day ago by markus.riester • 90
2
votes
2
answers
74
views
2
answers
limma voom - time course experiment - multi level experiment
limma duplicatecorrelation limma voom written 2 days ago by SPbeginner • 0 • updated 1 day ago by Gordon Smyth ♦ 33k
0
votes
1
answer
206
views
1
answer
Test for differential variability with missMethyl (DiffVar) using block design
limma block design matrix missmethyl diffvar written 11 months ago by Simone • 170 • updated 2 days ago by lhuang7 • 0
3
votes
1
answer
62
views
1
answer
Calling svaseq() multiple times
limma edger sva svaseq written 2 days ago by cats_dogs • 0 • updated 2 days ago by Ryan C. Thompson ♦ 6.7k
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