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Job: Bioinformatic Postdoc Position at University of Michigan
job postdoc bioinformatic written 19 minutes ago by yuabrahamliu • 0
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1
answer
32
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1
answer
DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle's
delayedarray delayedmatrixstats written 15 hours ago by maltethodberg • 100 • updated 1 hour ago by Peter Hickey • 380
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convert featureCounts's gene ID to entrez gene id
biomart rsubread gencode written 3 hours ago by YinCY • 0 • updated 2 hours ago by Gordon Smyth ♦ 35k
1
vote
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24
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1
answer
A major gene is missing in hugene10sttranscriptcluster.db (v.8.7.0)
hugene10sttranscriptcluster.db annotation written 8 hours ago by mengyuankan • 0 • updated 8 hours ago by James W. MacDonald ♦ 48k
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2
answers
40
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2
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DESeq2 memory allocation question
deseq2 memory problem written 10 hours ago by rbronste • 60 • updated 9 hours ago by Michael Love ♦ 19k
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answers
72
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Plotting Expression of Differential Transcripts plotDEXseq
dexseq deseq2 dtu stager written 7 days ago by rbenel • 0
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20
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Multiple factor design for differential expression with DESeq2
deseq2 differential gene expression multiple factor design written 18 hours ago by galozs • 0
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42
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Help with EdgeR R code - RNA-Seq Differental Gene Expression
rnaseq edger written 1 day ago by joseph.landry • 0
2
votes
1
answer
57
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1
answer
Error for converting from gene symbol to Entrez IDs
org.dr.eg.db entrez id written 3 days ago by modarzi • 10 • updated 1 day ago by James W. MacDonald ♦ 48k
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51
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Problem installing dartR: package 'qvalue' is not available for R version 3.5.1
qvalue dartr written 2 days ago by mumpalsson • 0 • updated 1 day ago by Martin Morgan ♦♦ 22k
0
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1
answer
57
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1
answer
Any difference between v$E and cpm(keep,log=TRUE)
limma written 3 days ago by Raymond • 0 • updated 2 days ago by Gordon Smyth ♦ 35k
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answers
40
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answers
How to combine multiple 'SDFset' into one
chemmine chemminetools written 2 days ago by shuaishigao_cn • 0
2
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86
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No gene set have size > 10 ...
clusterprofiler gene ontology written 3 days ago by anton.kratz • 40
7
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2
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100
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Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 4 days ago by C T • 90 • updated 3 days ago by Ryan C. Thompson ♦ 6.9k
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43
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How to use TPM in plotMA in DESeq2
deseq2 tpm written 3 days ago by georgewwp • 0
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27
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Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
rnaseq deseq2 gsea tpm salmon rna seq written 3 days ago by leo_CD • 0
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1
answer
39
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1
answer
How to convert CEL data to Bed/Bim/Fam/VCF for plink
affymetrix microarrays affymetrix 6.0 written 4 days ago by rliang1994 • 0 • updated 3 days ago by James W. MacDonald ♦ 48k
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1
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33
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1
answer
Rsamtools isSupplementary argument not working
rsamtools scanbamparam countbam issupplementary scanbamflag written 3 days ago by galeoni • 0 • updated 3 days ago by Martin Morgan ♦♦ 22k
2
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1
answer
55
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1
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Problem for finding "Locus Link ID" from Annotation file
ensembl tcga wgcna package locuslinkid genecode written 4 days ago by modarzi • 10 • updated 3 days ago by James W. MacDonald ♦ 48k
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1
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97
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1
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SVAseq and DESeq2 workflow
sva deseq2 written 4 days ago by capricygcapricyg • 0 • updated 3 days ago by Michael Love ♦ 19k
0
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0
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31
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Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
affyio error conda written 3 days ago by benjamin.saintpierre • 0
4
votes
1
answer
69
views
1
answer
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
biocparallel batchtoolsparam written 4 days ago by Chao-Jen Wong • 30 • updated 3 days ago by Mike Smith • 3.0k
2
votes
1
answer
91
views
1
answer
msmsTests, NA values in test.results output
proteomics fdr msmstests written 6 days ago by laural710 • 0 • updated 4 days ago by Laurent Gatto ♦ 1.0k
2
votes
2
answers
65
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2
answers
Queries related to limma package based analysis of masspectrometry data
limma written 4 days ago by manubhaikp • 10 • updated 4 days ago by Gordon Smyth ♦ 35k
0
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0
answers
56
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Job: PhD opportunity in Heidelberg for computational people
job single-cell phd position written 4 days ago by Simon Anders • 3.5k
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