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0
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0
answers
19
views
0
answers
Duplicated reads if 'which' has overlapping reads in ScanBamParam
rsamtools genomicalignments documentation written 7 hours ago by mertes • 0
0
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0
answers
18
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0
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Doubts about: Salmon -> Tximport -> Deseq2(vst) -> cox-regression
deseq2 salmon vst tximport cox-regression written 8 hours ago by filippo.martignano • 0
2
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1
answer
29
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1
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Appropriate experimental design for differential expresion
normalization cancer edger written 11 hours ago by jivarajivaraj • 10 • updated 9 hours ago by swbarnes2 • 110
0
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1
answer
42
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1
answer
How to run the annotation tool for GARFIELD v2: garfield_annotate_uk10k.sh
unix shell garfield awk embl-ebi written 3 days ago by rodrigo.duarte88 • 0
0
votes
1
answer
35
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1
answer
model design in rna seq - deseq2
deseq2 rna-seq variability model-design written 19 hours ago by acebolladaso.iacs • 0 • updated 11 hours ago by Michael Love ♦ 22k
0
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1
answer
34
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1
answer
Salmon (quant.sf) to tximport error
tximport written 16 hours ago by Merlin • 0 • updated 11 hours ago by Michael Love ♦ 22k
0
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0
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14
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0
answers
getSeqSrcpaths (forgeBSgenome) error files not found, but they are right there....
bsgenome forgebsgenome getseqsrcpaths written 13 hours ago by tguerreroa90 • 0
0
votes
1
answer
25
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1
answer
Can I input peak files from Genrich as input reads in DiffBind?
diffbind genrich written 5 days ago by gsenevirathne • 0 • updated 14 hours ago by Rory Stark • 2.7k
0
votes
1
answer
39
views
1
answer
Using DiffBind with only a counts table?
diffbind counts atac differential analysis atacseq written 7 days ago by pgontarz • 0 • updated 14 hours ago by Rory Stark • 2.7k
0
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0
answers
204
views
0
answers
Job: Full time and permanent research logistician in Bioinformatics
proteomics job bioinformatician transcriptomics written 24 days ago by Laurent Gatto ♦ 1.1k
0
votes
0
answers
68
views
0
answers
RSBML wrong edges
rsbml R celldesigner written 17 days ago by tjal0001 • 0
0
votes
1
answer
35
views
1
answer
Submitting R package in Bioconductor with Plink and vcftools Dependencies
R package dependencies written 1 day ago by MAPK • 0 • updated 22 hours ago by Aaron Lun • 23k
3
votes
2
answers
43
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2
answers
RNA-seq Statstical Models and Transcriptional Amplification
edger deseq2 transcriptional amplification written 1 day ago by Dario Strbenac • 1.4k • updated 22 hours ago by Aaron Lun • 23k
0
votes
1
answer
41
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1
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How to produce the fraction of reads in peaks (FRiP) using DiffBind
diffbind dba.count atac-seq frip dba.show written 2 days ago by Gary • 0 • updated 1 day ago by Rory Stark • 2.7k
4
votes
0
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204
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0
answers
News: Course announcement: Statistical Data Analysis for Genome Scale Biology (CSAMA) - Brixen, Italy 21-26 July 2019
news csama written 21 days ago by Wolfgang Huber ♦ 13k
0
votes
0
answers
19
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0
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Enough cell number or not based on library complexity evaluation by ATACseqQC?
atac-seq atacseqqc library complexity estimatelibcomplexity written 1 day ago by Gary • 0
0
votes
2
answers
158
views
2
answers
Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 3 months ago by chiara.facciotto • 0 • updated 2 days ago by mr.ahmed.saad • 0
1
vote
1
answer
88
views
1
answer
Experimental design RNAseq differential expression
limma edger design batch contrasts written 3 days ago by Pietro • 10 • updated 3 days ago by Aaron Lun • 23k
0
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0
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39
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0
answers
Argument map.symbol converting IDs even when its value is FALSE
pathview written 3 days ago by arthur.vinx • 0
2
votes
1
answer
54
views
1
answer
I can't import my gff file by `importTransprits()`,when I worked with SGSeq.
annotation software error written 6 days ago by 2315440517 • 0 • updated 3 days ago by Leonard Goldstein • 80
1
vote
1
answer
70
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1
answer
Normalization method for Exosome small RNA-Seq (DESeq2)
deseq2 written 4 days ago by IV • 30
0
votes
1
answer
47
views
1
answer
Applying external size factors to a dds did not yield expected results
normalization deseq2 size factors written 3 days ago by erwan.scaon • 0 • updated 3 days ago by Michael Love ♦ 22k
3
votes
1
answer
43
views
1
answer
Consensus modules preservation WGCNA
wgcna networks written 3 days ago by agustin.gonvi • 0 • updated 3 days ago by Peter Langfelder • 1.8k
0
votes
1
answer
40
views
1
answer
AnnotationData Packages for GPL2507 Sentrix Human-6 Expression BeadChip
microarray annotation written 4 days ago by kankejia0703 • 0 • updated 3 days ago by James W. MacDonald ♦ 49k
0
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0
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65
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0
answers
GO.db installation problems with BiocManager in R
R bioconductor written 3 days ago by d.m.j.thorburn • 0
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