Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
12
views
Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy names?
silva
decipher
DECIPHER
1 hour ago
Korneel
• 0
0
votes
0
replies
25
views
Inconsistencies between accessor functions for TxDb databases with selected seqlevels.
TxDb
GenomicFeatures
GenomeInfoDb
13 hours ago
dbsgtk
• 0
0
votes
1
reply
61
views
Subsetting data verses contrasts [DESeq2]?
DESeq2
updated 1 day ago by
ATpoint
★ 5.0k • written 1 day ago by
js101
• 0
0
votes
0
replies
43
views
How to start learning RNA sequence analysis with DESeq2
DESeq2
1 day ago
Syed
• 0
1
vote
4
replies
204
views
Bulk RNAseq analysis for
DESeq2
RNASeq
edgeR
limma
3 days ago • updated 2 days ago
Mariami
• 0
0
votes
0
replies
16
views
Spam:
What are the various factors which make affordable 2 BHK flats in Gurgaon the best option for first-time buyers?
mouse430a2.db
3 days ago
reeltor537
0
0
votes
5
replies
2.3k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
written 10.0 years ago by
john.hu
• 0
0
votes
3
replies
2.5k
views
PCA outliers cleaning
scRNAseq
Pipeline
Seurat
SingleCellExperiment
written 6.3 years ago by
albadrs.93
▴ 10
1
vote
2
replies
2.9k
views
Cleaning GeneSets from GSEA
msigdb
GSEABase
GSVA
written 3.9 years ago by
forlani.luca
• 0
0
votes
2
replies
167
views
soGGi error
soGGi
written 7 days ago by
Daniel
• 0
0
votes
1
reply
134
views
Chip Seq Analysis of RNA Polymerase 2
ChIPseeker
ChIPSeqData
ChIPSeq
Bioconductor
written 8 days ago by
Gaurav
• 0
5
votes
3
replies
635
views
Limma-voom sample weights and impact on DEG numbers
limma
written 7 weeks ago by
A.Barden
▴ 20
0
votes
1
reply
192
views
Job:
Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics (MSCA PF / EMBO)
Epigenetics
JobPosting
Neuroscience
updated 5 days ago by
mudasarnaeem2020
• 0 • written 9 days ago by
lalit.kaurani
• 0
0
votes
1
reply
207
views
News:
The Call for Abstracts for BioC2026 is open!
Bioconductor
Conference
written 9 days ago by
laurah ondari
• 0
0
votes
3
replies
303
views
Confirm that OpenStats will not be archived (pryr dependency)
OpenStats
written 15 days ago by
Marina
• 0
0
votes
15
replies
1.5k
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
written 19 months ago by
abhisek001
• 0
20
votes
6
replies
11k
views
Tutorial:
Updated Support Site Editor
support.bioconductor.org
editor
markdown
updates
Tutorial
written 7.0 years ago by
shepherl
4.3k
0
votes
0
replies
14
views
Spam:
PokeChill
customCMPdb
AMOUNTAIN
10 days ago
play
0
0
votes
1
reply
2.6k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
written 5.8 years ago by
Leonardo Collado Torres
★ 1.1k
0
votes
1
reply
144
views
msmsTests, inconsistent sign between lFC.Av and LogFC
msmsTests
Proteomics
13 days ago
Ben
• 0
0
votes
1
reply
158
views
DESeq2 for 16S rRNA Analysis
DESeq2
updated 13 days ago by
James W. MacDonald
68k • written 13 days ago by
lizflor
• 0
0
votes
0
replies
139
views
News:
Deadline Extended: EuroBioC2026 Call for Abstracts
Bioconductor
Conference
13 days ago
laurah ondari
• 0
0
votes
3
replies
1.5k
views
ChAMP trouble reading csv file
ChAMP
written 2.6 years ago by
Keasiykan
• 0
0
votes
0
replies
69
views
bcftools norm Equivalent
Rsamtools
15 days ago
Dario Strbenac
★ 1.6k
0
votes
5
replies
265
views
Lowly expressed genes reported as significant when using lfcThreshold in DESeq
RNASeq
DESeq2
DifferentialExpression
updated 16 days ago by
Michael Love
43k • written 16 days ago by
Ahmed Salah
• 0
0
votes
2
replies
210
views
lfc shrinkage estimator in DESeq2
DESeq2
written 16 days ago by
julia_mcdonough
• 0
2
votes
1
reply
203
views
Array weights in dpcDE
limpa
updated 16 days ago by
Gordon Smyth
53k • written 16 days ago by
Matt
• 0
0
votes
2
replies
180
views
Justify title track when rotation = 0
Gviz
gviz
written 22 days ago by
Xenia
• 0
0
votes
2
replies
194
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 17 days ago by
Gordon Smyth
53k • written 21 days ago by
DN
• 0
0
votes
13
replies
848
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 16 days ago by
Gordon Smyth
53k • written 22 days ago by
chp265
• 0
0
votes
1
reply
175
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 22 days ago by
Xenia
• 0
0
votes
2
replies
331
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 19 days ago by
LillianaVolkman99
• 0 • written 29 days ago by
Omer
• 0
0
votes
6
replies
653
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 23 days ago by
Martin Morgan
25k • written 10 weeks ago by
Benjamin
• 0
0
votes
1
reply
299
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 23 days ago by
ATpoint
★ 5.0k • written 26 days ago by
ja569116
• 0
2
votes
6
replies
531
views
limpa analysis advice
limpa
updated 14 days ago by
Gordon Smyth
53k • written 27 days ago by
SamGG
▴ 360
0
votes
1
reply
163
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
written 27 days ago by
laurah ondari
• 0
4
votes
2
replies
389
views
When to use edgeR or limma
edgeR
limma
updated 26 days ago by
Gordon Smyth
53k • written 29 days ago by
abzhang97
• 0
1
vote
3
replies
250
views
Incosistencies in buildSNNGraph() function
scran
seurat
written 4 weeks ago by
Lucas
• 0
0
votes
2
replies
1.1k
views
A problem occurs when running the monocle2
monocle
written 5 months ago by
yuheng_yang
• 0
0
votes
7
replies
603
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 21 days ago by
Gordon Smyth
53k • written 29 days ago by
emily.wolfrum
• 0
0
votes
2
replies
200
views
Questions about bacon QC and correction on EWAS results
bacon
written 29 days ago by
sup0903
• 0
3
votes
4
replies
394
views
Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
29 days ago • updated 28 days ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
160
views
Development of MSstat workflow to analyze DIA time series data
MSstats
updated 29 days ago by
Gordon Smyth
53k • written 29 days ago by
sithurandi
• 0
0
votes
0
replies
360
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
4 weeks ago
srkingwu
• 0
8
votes
8
replies
3.0k
views
Confounded design, batch effect correction (edgeR)
rnaseq
edger
differential gene expression
batch effect
written 7.4 years ago by
Laura
▴ 20
0
votes
1
reply
147
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
written 4 weeks ago by
henry.tietz
• 0
3
votes
4
replies
484
views
Clarification on counting in Rsubread (featureCounts)
featureCounts
Rsubread
updated 29 days ago by
Gordon Smyth
53k • written 8 weeks ago by
Luca
• 0
0
votes
1
reply
153
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 4 weeks ago by
Frances Turner
▴ 20
0
votes
1
reply
170
views
How to convert .raw data for use in xcms
xcms
written 4 weeks ago by
Monica
• 0
0
votes
1
reply
376
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
written 4 weeks ago by
rubina.tabassum
• 0
46,749 results • Page
1 of 935
Recent ...
Replies
Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
Awards
• All
Popular Question
to
Sean Davis
21k
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.3k
Popular Question
to
Andreas Zankl
▴ 80
Popular Question
to
Guido Hooiveld
★ 4.1k
Locations
• All
United States,
17 minutes ago
United States,
30 minutes ago
Chile,
1 hour ago
Barcelona, Spain,
1 hour ago
Belgium,
1 hour ago
Traffic: 2813 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6