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0
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4
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0
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package for mismatch distribution?
genetics statistics written 3 hours ago by myriam.croze07 • 0
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1
answer
43
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1
answer
Different DEG results using Ballgown and edgeR
rnaseq edger batch effect ballgown adjustvars written 15 hours ago by IRAIA.MAIALEN • 0 • updated 5 hours ago by Gordon Smyth ♦ 36k
1
vote
1
answer
69
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1
answer
Different results with DESeq2 and EdgeR
edger deseq2 written 21 hours ago by jivarajivaraj • 10 • updated 5 hours ago by Gordon Smyth ♦ 36k
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1
answer
17
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1
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects written 10 hours ago by thyagoleal • 30 • updated 6 hours ago by Gordon Smyth ♦ 36k
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11
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Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo hta written 8 hours ago by RV • 10
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14
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Array quality metrics for large sample size
microarray quality written 10 hours ago by RV • 10
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1
answer
26
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1
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Results table completely wrong for specified contrast of
deseq2 counts logfoldchange written 11 hours ago by A • 40 • updated 11 hours ago by Michael Love ♦ 21k
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0
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21
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0
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newSCESet(countData=all.counts) function not working
single cell experiment single cell rnaseq written 13 hours ago by bhuwankhatri11 • 0
2
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1
answer
33
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1
answer
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
tcga rest http gdc genomicdatacommons written 1 day ago by mk • 10 • updated 15 hours ago by Sean Davis ♦ 21k
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33
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DESeq2 for analyzing differential expression based on dispersion across samples within groups, instead of based on expression means.
deseq2 dispersion written 16 hours ago by emilio.marmol • 0
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1
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44
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1
answer
Deseq2: How to compine reseult of different pairwise comparisons
deseq2 written 2 days ago by tarekzakaria.badr • 0 • updated 19 hours ago by Michael Love ♦ 21k
1
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1
answer
35
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1
answer
different observation of DEG for same group
deseq2 de written 22 hours ago by lkianmehr • 0 • updated 19 hours ago by Michael Love ♦ 21k
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1
answer
76
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1
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DESeq2 LRT test behaving strangely?
deseq2 written 3 days ago by casikecola • 0
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1
answer
34
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1
answer
biomaRt bug report
biomart software error written 1 day ago by luoyuan1984 • 0 • updated 21 hours ago by Mike Smith • 3.2k
1
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1
answer
36
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1
answer
Rsubread- feature counts
annotation rsubread featurecounts written 21 hours ago by memoly101 • 0 • updated 21 hours ago by Gordon Smyth ♦ 36k
2
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1
answer
33
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1
answer
edgeR DEG how many treatments should be fitted to GLM
edger glm written 22 hours ago by zhang.jianhai • 0 • updated 22 hours ago by Gordon Smyth ♦ 36k
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1
answer
51
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1
answer
regioneR ignore the strand information when using the extendRegions() function
regionr extendregions written 5 weeks ago by wuzefeng2008 • 0 • updated 22 hours ago by bernatgel • 90
9
votes
1
answer
418
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1
answer
Pre-processing RNA-seq data (normalization and transformation) for GSVA
normalization gsva rna-seq transformation gene set variation analysis written 9 months ago by rached • 40
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1
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32
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1
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MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
bioconductor pride msnbase rpx pxdataset written 1 day ago by fsgolestan • 0 • updated 1 day ago by Laurent Gatto ♦ 1.1k
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24
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unwanted linebreaks using write.table with a dataframe created via the myvariant.info r package
annotation software error written 1 day ago by Icke Blanco • 0
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0
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44
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0
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Need expert suggestion about Bioconductor package for microarray data anlaysis
affy limma written 1 day ago by mahmudornob • 0
1
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1
answer
48
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1
answer
edgeR DEG sample size
edger minimum samples written 2 days ago by jzhan067 • 0 • updated 1 day ago by Gordon Smyth ♦ 36k
0
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1
answer
40
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1
answer
Installation of r2excel package
packages github written 2 days ago by tkapell • 0 • updated 2 days ago by Gordon Smyth ♦ 36k
7
votes
2
answers
72
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2
answers
Limma import .gpr file error
microarray limma gpr written 3 days ago by guillaume.rbt • 0 • updated 2 days ago by Gordon Smyth ♦ 36k
2
votes
1
answer
54
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1
answer
Using non standard charachters with XStrings object in BioStrings
biostrings inosine bases hydroxyadenine azobenzene iupac written 7 days ago by aravind-j • 10 • updated 3 days ago by Hervé Pagès ♦♦ 13k
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