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1
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1
answer
41
views
1
answer
EdgeR - Complex design - contrasts/coefficients
edger glm written 20 hours ago by D • 0 • updated 4 hours ago by Yunshun Chen • 430
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1
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17
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1
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Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy limma piano written 8 hours ago by abolfazl.nikakhtar • 0 • updated 8 hours ago by James W. MacDonald ♦ 51k
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37
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1
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DESeq2 design for paired samples 'Model matrix not full rank'
deseq2 written 8 hours ago by rrdavis • 0 • updated 8 hours ago by Michael Love ♦ 25k
2
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32
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News: Cite Bioconductor packages using Zotero (browser extension)
news zotero written 8 hours ago by Qiang • 50
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31
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1
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Is ECIS Data within BioConductor's remit?
submission ecis bioconductor scope written 20 hours ago by jhuc964 • 10 • updated 10 hours ago by Martin Morgan ♦♦ 23k
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2
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42
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2
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DEseq2 design for knockdown conditions and treatment
deseq2 written 16 hours ago by j.siefert • 0 • updated 13 hours ago by swbarnes2 • 310
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1
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27
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1
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Detection of large regions of expression
derfinder intergenic expression written 1 day ago by António Miguel de Jesus Domingues • 460 • updated 13 hours ago by Leonardo Collado Torres • 650
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1
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15
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1
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Couldnt find getAE and ae2bioc?
bioconductor library packages ae2bioc getae written 16 hours ago by kodherif • 0 • updated 15 hours ago by Mike Smith • 3.9k
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31
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1
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Extracting read coverage data from a Gviz AlignmentsTrack
gviz sashimi written 20 days ago by willbradshaw • 0 • updated 15 hours ago by Robert Ivanek • 640
2
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1
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68
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1
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Can I colapsing raw read counts?
sva deseq2 R batch written 2 days ago by jivarajivaraj • 10 • updated 15 hours ago by Michael Love ♦ 25k
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1
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25
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1
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 16 hours ago by hsbio • 0 • updated 16 hours ago by Michael Love ♦ 25k
4
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1
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66
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1
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DESeq2 lfcShrink and unshrunk fold changes
deseq2 written 2 days ago by igor • 30 • updated 16 hours ago by Michael Love ♦ 25k
0
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1
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29
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1
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51 views DESeq2 RNAseq differential expression analysis
deseq2 rna seq wald test likelihood ratio written 1 day ago by adeler001 • 0 • updated 16 hours ago by Michael Love ♦ 25k
1
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1
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62
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1
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Differential gene expression anlaysis?
rnaseq normalization R written 1 day ago by 1234anjalianjali1234 • 0 • updated 22 hours ago by Gordon Smyth ♦ 38k
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49
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can i get the database of bioconductor?
database written 1 day ago by jsdh120707 • 0
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0
answers
17
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0
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Is it possible to change how DiffBind merge peaks?
chipseq diffbind written 1 day ago by zhenfeng.liu1 • 10
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220
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scanBam and countBam end prematurely under Windows 10
rsamtools written 6 days ago by Gordon Smyth ♦ 38k
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31
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Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argument is of length zero
xcms parameters adjustrtime scantime error biocparallel error written 1 day ago by abrsoule • 20
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14
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ballgown -- how is statistical test performed
rna-seq ballgown written 1 day ago by michael • 0
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16
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ballgown: how to test for DE for my experimental setup
rna-seq ballgown written 1 day ago by michael • 0
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0
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33
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0
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Blocking term for nested design in limma
limma model.matrix mixed-effects written 1 day ago by Finn • 0
2
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2
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165
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2
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Minfi issue: return code from pthread_create() is 22
minfi 450k written 8 weeks ago by jshouse • 10 • updated 1 day ago by lucy • 0
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19
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News: New Package Submission Deadline for Bioc Release 3.10
news release package submission deadline new package written 1 day ago by shepherl ♦♦ 1.5k
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0
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20
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News: Bioconductor 3.10 release schedule
news bioconductor release deadlines written 1 day ago by shepherl ♦♦ 1.5k
0
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2
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51
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2
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Why is the rGREAT's available ontology with category = "Pathway Data" not workin?
rgreat pathway analisis pathway data getenrichmenttables() availableontologies(job) written 3 days ago by researcher • 0 • updated 1 day ago by Zuguang Gu • 100
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