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3
votes
3
answers
75
views
3
answers
CRISPRseek Unusual Error
crisprseek written 3 days ago by Dawid G. Nowak • 10 • updated 39 minutes ago by Julie Zhu • 3.9k
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9
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0
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KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways written 1 hour ago by zhang.jianhai • 0
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37
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How to use EnsDb in annotatePeak from package "ChIPseeker"
chipseeker granges txdb annotatepeak ensdb written 6 hours ago by foehn • 20
2
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1
answer
19
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1
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tximport: question concerning 'bias corrected counts without an offset' method
deseq2 tximport written 8 hours ago by Thomas Bradley • 0 • updated 8 hours ago by Michael Love ♦ 21k
2
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3
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47
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3
answers
edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
rnaseq normalization edger deseq2 hemoglobin written 14 hours ago by aec • 40 • updated 8 hours ago by Ryan C. Thompson ♦ 7.2k
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1
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16
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1
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Data filtering in DESeq2
deseq2 data filtering written 9 hours ago by sally.badawi • 0 • updated 9 hours ago by Michael Love ♦ 21k
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1
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35
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1
answer
DESeq2 overestimates log2Fold Change
deseq2 written 10 hours ago by marcomhefti • 0 • updated 10 hours ago by James W. MacDonald ♦ 49k
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1
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19
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1
answer
differentail expression analysis with interaction terms
edger deseq2 design matrix interaction written 11 hours ago by Assa Yeroslaviz • 1.4k • updated 10 hours ago by James W. MacDonald ♦ 49k
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0
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9
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0
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News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub news ensembl gtf 2bit written 11 hours ago by shepherl ♦♦ 1.1k
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1
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35
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1
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LRT test followed by filtering based on LFC
deseq2 lrt lfc written 15 hours ago by sally.badawi • 0 • updated 13 hours ago by Michael Love ♦ 21k
0
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1
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22
views
1
answer
HDF5Array Single cell experiment objects - can on-disk files change?
hdf5array written 22 hours ago by sarah.williams1 • 20 • updated 13 hours ago by Aaron Lun • 22k
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votes
1
answer
23
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1
answer
Summary results interpretation in DeSeq2
deseq2 written 16 hours ago by sharmila.ahmad • 0 • updated 14 hours ago by Michael Love ♦ 21k
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0
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14
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0
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GWAStools error when performing regression analysis
gwastools association gdsgenotypereader hassex written 15 hours ago by thye • 0 • updated 15 hours ago by Martin Morgan ♦♦ 22k
4
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3
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55
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3
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How to convert a xlsx data file to MSnSet format?
proteomics msnbase msnid msmstests lc-ms/ms written 3 days ago by fsgolestan • 10 • updated 15 hours ago by Laurent Gatto ♦ 1.1k
6
votes
1
answer
36
views
1
answer
Does IHW use the supplied alpha for the correction calculations?
deseq2 ihw written 1 day ago by k.vitting.seerup • 60 • updated 17 hours ago by Nikos Ignatiadis • 160
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1
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27
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1
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DESeq2:varianceStabilizingTransformation suggested. Results suspicious
deseq2 written 1 day ago by jovel_juan • 10 • updated 1 day ago by Michael Love ♦ 21k
1
vote
1
answer
80
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1
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How to read variants into R from large dataset using VariantAnnotation
software error written 6 days ago by linayangzju • 0 • updated 1 day ago by Martin Morgan ♦♦ 22k
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1
answer
31
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1
answer
How can I create a GmapGenome that doesn't start at index 1?
gmapr written 2 days ago by Kyle Johnsen • 20
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0
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29
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0
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DESeq2 w. pathway/network info as a prior knowledge
deseq2 pathway differential expression written 1 day ago by guidobarzaghi • 0
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1
answer
44
views
1
answer
DESeq2: paired samples + controls
deseq2 written 1 day ago by guidobarzaghi • 0 • updated 1 day ago by Michael Love ♦ 21k
1
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1
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51
views
1
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DESeq2: 5 Conditions (B vs C) vs (D vs B)
deseq2 contrast ratio of ratio written 1 day ago by Fischer-philipp • 0 • updated 1 day ago by Michael Love ♦ 21k
5
votes
1
answer
55
views
1
answer
Ranges from a fasta file
biostrings genomicranges granges fasta written 1 day ago by Konstantinos Yeles • 20 • updated 1 day ago by Martin Morgan ♦♦ 22k
0
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0
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16
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0
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Error while using COHCAP pipeline for 450k methylation data analysis
R cohcap 450k methylation written 1 day ago by sayamsmruti • 0
0
votes
0
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35
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0
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation enmix bmiq written 1 day ago by moldach • 10
5
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2
answers
48
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2
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Conduct likelihood ratio tests for a variable that isn't explicitly defined by matrix.model
edger written 2 days ago by blumroy • 0 • updated 2 days ago by Gordon Smyth ♦ 36k
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