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Answer: Is it still possible to do batch correction for my data?
by
Gordon Smyth
53k
I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch
```
design <-…
Answer: specifying refColumn in calcNormFactors()
by
Gordon Smyth
53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2
by
Tim Peters
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230
Hi Pooja,
There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2
by
dani.guan.3
•
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Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2
by
Michael Love
43k
> out of my 30,229 genes, 795 (2.6%) are better explained ...
Not exactly. Frequentist statistics is not symmetric in this way. If it were…
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