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0
votes
1
answer
69
views
1
answer
Downloading HTSeq raw reads with TCGABiolinks
rnaseq tcgabiolinks written 4 days ago by sherajilir • 0
0
votes
0
answers
7
views
0
answers
Cannot find the package RDRToolbox that has been installed
software error written 2 hours ago by sunjoy0102 • 0 • updated 2 hours ago by shepherl ♦♦ 1.4k
0
votes
0
answers
19
views
0
answers
Boruta and mtry parameter
random forest boruta mtry ranger written 4 hours ago by erwan.scaon • 0
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0
answers
13
views
0
answers
legChrom = NA doesn't hide legend
chromplot written 2 hours ago by jordi.planells • 0
0
votes
1
answer
28
views
1
answer
DESeq2: three conditions lfcShrink CvsB analysis
deseq2 lfcshrink written 19 hours ago by kcbauer • 0 • updated 4 hours ago by Michael Love ♦ 24k
0
votes
1
answer
82
views
1
answer
how to set design for this DOE in DESeq2
deseq2 written 3 days ago by aimin.at.work • 0 • updated 4 hours ago by Michael Love ♦ 24k
0
votes
1
answer
105
views
1
answer
Help with formula design for DESeq2
deseq2 written 3 days ago by msubramanian1 • 0 • updated 4 hours ago by Michael Love ♦ 24k
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0
answers
12
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0
answers
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart R ensembl bioconductor written 4 hours ago by lbuo • 0
0
votes
1
answer
45
views
1
answer
MDS plotting within the limma/voom workflow
limma deseq2 voom written 18 hours ago by Ben Gabriel • 0 • updated 12 hours ago by Gordon Smyth ♦ 37k
0
votes
0
answers
33
views
0
answers
DEXSeq error in dexseq_count.py. ValueError: need more than 4 values to unpack
dexseq written 14 hours ago by Paola Cornejo • 0
0
votes
1
answer
94
views
1
answer
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
egsea written 3 days ago by pgugger • 0
3
votes
1
answer
41
views
1
answer
Quiery to biomart returned an invalid result
biomart R written 1 day ago by Seth • 10 • updated 1 day ago by Mike Smith • 3.7k
0
votes
0
answers
41
views
0
answers
Module membership vs gene significance result and Modules-trait relationships reuslt have a different trend
wgcna written 2 days ago by BruceWong19990 • 0
0
votes
0
answers
20
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0
answers
Job: REBIT-POD EMBL-IIT postdoctoral fellowships between Italy and UK
job embl nanopore iit written 1 day ago by mattia pelizzola • 200
1
vote
1
answer
28
views
1
answer
Cannot determine whether maintainer is subscribed to the bioc-devel mailing list (requires admin credentials).
software error written 1 day ago by 2170207901 • 0 • updated 1 day ago by Mike Smith • 3.7k
1
vote
2
answers
65
views
2
answers
Killed 9 on macOS Mojave for Rsubread buildindex
rsubread buildindex killed 9 mojave written 7 days ago by raabec • 0 • updated 1 day ago by Wei Shi • 3.1k
0
votes
0
answers
51
views
0
answers
Issue installing RNA-seq workflow
deseq2 software error rnaseqgene workflow written 2 days ago by pavan-bioconductor • 0 • updated 2 days ago by Martin Morgan ♦♦ 23k
2
votes
2
answers
212
views
2
answers
Build GPos from IPos
genomicranges granges gpos written 9 months ago by maltethodberg • 110 • updated 2 days ago by Hervé Pagès ♦♦ 14k
0
votes
1
answer
47
views
1
answer
Warning in makeTxDbFromGFF
txdb written 8 days ago by weir • 0 • updated 2 days ago by Hervé Pagès ♦♦ 14k
0
votes
1
answer
42
views
1
answer
DESeqDataSetFromMatrix error: dds file described as <Object with null pointers>
deseq2 written 5 days ago by liujinghx • 0 • updated 2 days ago by Michael Love ♦ 24k
2
votes
0
answers
71
views
0
answers
rma summarization error when normalizing using oligo and brainarray cdf
oligo brainarray mbni written 3 days ago by Moosa • 0
1
vote
1
answer
56
views
1
answer
adjusting for confounding effects in edgeR
edger confounding written 3 days ago by Victoria • 0 • updated 3 days ago by Aaron Lun • 24k
4
votes
1
answer
95
views
1
answer
Combining counts from non-replicate samples in RNA-Seq analysis for a synergistic system
normalization edger counts rna-seq written 4 days ago by Tima Karginov • 0 • updated 3 days ago by Aaron Lun • 24k
0
votes
1
answer
159
views
1
answer
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 rstudio summarizedexperiment null written 3 days ago by 200dumplings • 0 • updated 3 days ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
32
views
1
answer
tximport from Galaxy output
normalization tximport written 3 days ago by agustin.gonvi • 10 • updated 3 days ago by Michael Love ♦ 24k
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