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3
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RNAseq analysis of organism not included in BSgenome using QuasR
quasr written 8 minutes ago by anuranjansrathore • 0
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answer
36
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1
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need help with overlap overrepresentation using permutation tests for composite genomic ranges
iranges granges regioner written 5 months ago by Angel Liang • 0 • updated 27 minutes ago by bernatgel • 130
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votes
2
answers
234
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answers
How to create manhattan plot with DESeq2
deseq2 rna seq mahattan plot written 11 months ago by adeler001 • 0 • updated 34 minutes ago by bernatgel • 130
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14
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ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
chipqc written 10 hours ago by lida • 0
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6
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answers
What lengths are used to calculate TPM in "scater" package
rnaseq scater calculatetpm written 1 hour ago by Matan G. • 20
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43
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1
answer
News: Final List of Deprecated Packages for Bioc3.12
annotation experimentdata news software deprecated written 8 days ago by shepherl ♦♦ 2.2k
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9
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answers
diffSpliceDGE: Obtaining exon-level counts and normalisation step
normalization edger splicing differential exon usage written 2 hours ago by oakhamwolf • 0
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1
answer
16
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1
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GSVA on gene sets with 2 genes
gsva rna-seq gene sets written 6 hours ago by Endre Sebestyen • 60 • updated 5 hours ago by Robert Castelo • 2.6k
1
vote
1
answer
37
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1
answer
csaw for ATAC, quantitation of Tn5 insertion sites only
csaw atac-seq tn5 insertions written 21 hours ago by alexandre.blais • 0 • updated 5 hours ago by Aaron Lun • 26k
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2
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39
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2
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Multi-design batches analysis DESeq2
deseq2 written 22 hours ago by Sedlin • 0
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18
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
metabolomics proteomics tutorial mass spectrometry written 8 hours ago by Johannes Rainer • 1.7k
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2
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40
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2
answers
biomart archive version
annotation biomart written 17 hours ago by raakesh_7111 • 0
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34
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Implementation of MultiAssayExperiment and curatedTCGAData R packages for quering and prosessing multi-omics cancer datasets
multiassayexperiment tcgautils curatedtcgadata written 1 day ago by svlachavas • 750 • updated 12 hours ago by Marcel Ramos ♦♦ 410
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1
answer
34
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1
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overshrinkage of LFC with apeglm
deseq2 written 1 day ago by dequattro.concetta • 10 • updated 16 hours ago by Michael Love ♦ 30k
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1
answer
35
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1
answer
DESeq2 and shrinkage
deseq2 written 1 day ago by ju__ra • 0 • updated 16 hours ago by Michael Love ♦ 30k
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1
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46
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1
answer
Converstion of Ranged Summarized Experiment to Data Frame
summarizedexperiment rangedsummarizedexperiment written 20 hours ago by sylvie2 • 0 • updated 19 hours ago by svlachavas • 750
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1
answer
60
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1
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flowset/ncdfFlowset replace keywords doesn't work right
flowcore ncdfflow written 1 day ago by anders.tondell • 30 • updated 20 hours ago by Jake Wagner • 270
2
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2
answers
56
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2
answers
WGCNA: Topological Overlap Matrix (TOM) Values Greater Than 1
wgcna written 6 days ago by teresisc • 10
4
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1
answer
58
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1
answer
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna written 1 day ago by anthony.nash • 20 • updated 21 hours ago by James W. MacDonald ♦ 54k
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14
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flowCore: gives a "emptyValue" error when / is used as an escape character in .fcs file metadata
software error written 23 hours ago by andrea.mcewan • 0
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24
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Error: Unable to establish connection with R session
software error written 23 hours ago by pedrodavidaguilar90 • 0 • updated 23 hours ago by Laurent Gatto ♦ 1.3k
2
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2
answers
41
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2
answers
Email address change on bioconductor support site
bioconductor written 1 day ago by Leonard Goldstein • 110 • updated 1 day ago by Istvan Albert ♦ 20
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1
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39
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1
answer
edgeR for single-cell data with inferential replicates
edger alevin written 1 day ago by ATpoint • 210
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0
answers
13
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answers
DepMap copy number
software error depmap written 1 day ago by DannyM • 0
2
votes
1
answer
53
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1
answer
getLDS error in scan
convert biomart getlds gene symbols written 2 days ago by mvis1231 • 0 • updated 1 day ago by Mike Smith • 4.7k
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