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1
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scan error in biomaRt with non-Ensemble datsets
software error written 44 minutes ago by Rebecca • 0
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0
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14
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DEP: TMT analysis from MaxQuant output
proteomics dep tmt written 3 hours ago by dparrine • 0
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24
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WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for different types of trait variables
wgcna written 5 hours ago by stu111538 • 0
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votes
1
answer
19
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1
answer
The order used in common practce? batch effect removel and normalization
normalization batch effect written 7 hours ago by catechize.2.learn • 0 • updated 6 hours ago by chris86 • 380
3
votes
2
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38
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2
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How solve bioconductor dependency package error?
package dependency error written 1 day ago by s.rezaalavian • 0 • updated 7 hours ago by anasmith162 • 0
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4
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1.4k
views
4
answers
Rhtslib - install error
error installation rhtslib zlib written 10 months ago by boboshaq • 0 • updated 12 hours ago by Hervé Pagès ♦♦ 14k
1
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2
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45
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2
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Error on Rhtslib package installation
software error rhtslib zlib.h written 21 hours ago by juandenciso14 • 0 • updated 12 hours ago by Hervé Pagès ♦♦ 14k
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12
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diffbind counts as same values
diffbind dba.report dba.count written 14 hours ago by chadnewton • 0
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26
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Job: Post-doc fellow - Aparicio Lab
sequencing job bioinformatics single cell genome written 18 hours ago by jmaanaki • 0
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0
answers
11
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behaviour of regioneR permTest function
regioner written 18 hours ago by shoko • 0
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1
answer
24
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1
answer
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
normalization cytof cydar written 1 day ago by ghogg • 0 • updated 18 hours ago by Aaron Lun • 24k
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24
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Variation between technical replicates (DESeq2, batch effects)
rnaseq deseq2 differential expression batch effect replicates written 22 hours ago by Nik dAK • 10
2
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1
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27
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1
answer
Handle missing values in the z-score matrix while plotting heatmap in the ComplexHeatmap
R heatmap complexheatmap matrix missing values written 1 day ago by mohammedtoufiq91 • 0 • updated 23 hours ago by Zuguang Gu • 120
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47
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Curl error on ensembl biomaRt access
biomart curl written 1 day ago by fca.collin • 0
4
votes
2
answers
259
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2
answers
scanBam and countBam end prematurely under Windows 10
rsamtools written 9 days ago by Gordon Smyth ♦ 38k • updated 1 day ago by Hervé Pagès ♦♦ 14k
2
votes
4
answers
1.1k
views
4
answers
Install Rsubread in win10, failed, how to proceed?
rsubread windows10 rtools written 2.2 years ago by Yisong Zhen • 200 • updated 1 day ago by Yang Liao • 110
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votes
1
answer
50
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1
answer
rlog() is not working ?
deseq2 written 1 day ago by shn_yns • 0 • updated 1 day ago by Michael Love ♦ 25k
1
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0
answers
164
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0
answers
News: Organizing Committee for BioC2020
news conference committee bioc2020 written 1 day ago by shepherl ♦♦ 1.5k
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1
answer
1.3k
views
7 follow
1
answer
design matrix with limma
limma written 10.0 years ago by Diya v • 20 • updated 1 day ago by kobayotay • 0
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32
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News: Protemics with R and Bioconductor course in Berlin
proteomics news R written 1 day ago by info • 0
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0
answers
19
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0
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DSS for non-CpG site analysis
dss methylation written 2 days ago by CalM • 0
0
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1
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46
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1
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DESeq2 - controlling for block vs analysing blocks separately and lfcShrink changes the DE genes drastically
deseq2 written 2 days ago by rmash • 0 • updated 2 days ago by Michael Love ♦ 25k
4
votes
1
answer
81
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1
answer
EdgeR - Complex design - contrasts/coefficients
edger glm written 3 days ago by D • 0 • updated 2 days ago by Yunshun Chen • 460
3
votes
1
answer
61
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1
answer
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy limma piano written 2 days ago by abolfazl.nikakhtar • 0 • updated 2 days ago by James W. MacDonald ♦ 51k
0
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1
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60
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1
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DESeq2 design for paired samples 'Model matrix not full rank'
deseq2 written 2 days ago by rrdavis • 0 • updated 2 days ago by Michael Love ♦ 25k
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