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Error "DESeqDataSetFromMatrix" function not found
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Analyzing barcode sequencing experiments with DESeq2/edgeR
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1 day ago Palmira • 0
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32
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5 days ago millerh1 • 0
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5 days ago • updated 1 day ago Bhavana • 0
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6 days ago OliverBoynton • 0
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6 days ago • updated 8 hours ago Kelen • 0
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8 days ago • updated 7 days ago OE • 0
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Unable to load mm10 genome for use with GenomicDistributions package
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Pathview error Warning: Parsing ./mmu04928.xml file failed, please check the file!
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42,718 results • Page 1 of 855
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Answer: Can´t install GenomicRanges and rtracklayer by James W. MacDonald 60k
You can't just call `BiocManager::install()` and expect it to know what you want to install! You need to specify the packages you want as a…
Comment: why org.Hs.egGO2ALLEGS contain genes number difference from GO database? by pengmin.wang.1 • 0
yes, I also find genes in org.Bt.egGO2ALLEGS (bovine) are always less than online GO database in the same term. So do you know how to get t…
Comment: how to get gene list for given GO terms? by pengmin.wang.1 • 0
Hi, do you know how to get the gene list that have annotations from online GO database. For example, y <- as.list(org.Bt.egGO2ALLEGS), y co…
Comment: RSEM - tximport; where is effective_length information used? Implications for sc by Kelen • 0
Thank you. Gene-level analysis. I don't yet have a specific downstream pipeline in mind - I am trying to understand what limitations I migh…
Comment: FeaturePlot in scater by Guandong Shang ▴ 20
Thanks, this is what I want!
Votes
A: paired and unpaired test at the same time with voom limma
Comment: Duplicate correlation with limma in before-after exposure experiment
Answer: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
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