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Recent ...
Replies
Comment: Doubt about expression data as well as assay
by
ATpoint
★
2.4k
Should've followed the advise from Slack and add any details, for example a specific dataset.
Comment: Help with Error in DiffBind
by
Chris
•
0
Thanks Rory for your reply! My peak files is .broadPeak, created from nf-core/ATAC. The PeakCallers column is broad.
Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
by
Giulia
•
0
Hi Rory,
Thank you for your quick reply and advice on the matter.
The following are the MAplots for the analysis using the background=TRU…
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
by
ATpoint
★
2.4k
I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561
Comment: FlowSOM with unrelated channels
by
helucro
▴
70
Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…
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