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Comment: Can I trust the differential expression analysis when the two groups overlap on
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BioinfGuru
▴ 30
Did you make any headway? Have you tried plotting a [hierarchical clustering heatmap][1] on tpm normalised count data? It is simple and fa…
Comment: Ploting of normalized counts after batch removal
by
ATpoint
★ 4.2k
You can use ComBat-seq from the sva package to regress covariates such as the pairing information. Advantage is that it returns "raw correc…
Answer: Ploting of normalized counts after batch removal
by
Michael Love
42k
You can't really plot counts with variance from nuisance covariates removed. I would go the route of using VST data instead (see FAQ).
Answer: SingleR Label.Ont
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Burbon Burbonovich
• 0
While exploring different providers on my favorite gaming platform, I stumbled upon the Igrosoft section at [https://slotscity.com/provider…
Comment: How to compare subset of samples from VCF files
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Gordon Smyth
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Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
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Answer: SingleCellExperiment and SingleR for identifying T cell subsets
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
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