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'version' is missing error when running makeTxDbPackageFromUCSC
Cancer TranscriptDb IRanges GenomicFeatures Cancer TranscriptDb IRanges GenomicFeatures
updated 8.6 years ago by ▴ 10 • written 10.7 years ago by 16k
0
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1
reply
1.1k
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SNPlocs package for dbSNP 135
Cancer SNPlocs Cancer SNPlocs
updated 8.8 years ago by • 0 • written 12.3 years ago by 16k
0
votes
6
replies
2.3k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 8.9 years ago by • 0 • written 15.0 years ago by 16k
0
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0
replies
1.1k
views
回复： XVector
Network Cancer IRanges XVector
9.7 years ago Hervé Pagès 16k
0
votes
0
replies
1.3k
views
XVector
Cancer XVector
9.7 years ago Hervé Pagès 16k
0
votes
0
replies
1.2k
views
subseq with iranges on reverse strand
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
9.7 years ago Hervé Pagès 16k
0
votes
1
reply
1.1k
views
Putative bug in Biostrings
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 9.8 years ago by ▴ 10 • written 9.9 years ago by 16k
0
votes
3
replies
751
views
[Bioc-devel] granges() method for GenomicRanges objects akin to ranges()...
Cancer GenomicRanges Cancer GenomicRanges
updated 9.9 years ago by ★ 1.3k • written 9.9 years ago by 16k
0
votes
1
reply
762
views
singe_sequences.fa.gz file in Bsgenome.Hsapiens.NCBI.GRCh38 is too big
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
9.9 years ago Hervé Pagès 16k
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 10.0 years ago by ▴ 570 • written 10.0 years ago by 16k
0
votes
0
replies
874
views
[devteam-bioc] readGAlignmentPairs perfromace issue
RNASeq Cancer RNASeq Cancer
10.0 years ago Hervé Pagès 16k
0
votes
0
replies
1.5k
views
Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
10.1 years ago Hervé Pagès 16k
0
votes
5
replies
1.3k
views
A question about the function readGAlignmentPairs in GenomicRnages package
Cancer Cancer
10.1 years ago Hervé Pagès 16k
0
votes
5
replies
3.2k
views
overlap regions between two GRanges (or GRangesList)
Cancer Cancer
updated 10.2 years ago by ▴ 20 • written 10.2 years ago by 16k
0
votes
0
replies
793
views
CIGAR-aware coverage
Coverage GenomicAlignments Coverage GenomicAlignments
10.2 years ago Hervé Pagès 16k
0
votes
1
reply
1.3k
views
I need help making a dcf seed file to encapsulate a genome assembly im using.
Cancer Yeast BSgenome BSgenome Cancer Yeast BSgenome BSgenome
updated 10.4 years ago by ▴ 10 • written 10.4 years ago by 16k
0
votes
0
replies
1.6k
views
Easy way to convert CharacterList to character, collapsing each element?
Annotation Cancer Biostrings IRanges Annotation Cancer Biostrings IRanges
10.4 years ago Hervé Pagès 16k
0
votes
1
reply
1.4k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 10.4 years ago by ▴ 240 • written 10.4 years ago by 16k
0
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0
replies
1.9k
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Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
10.4 years ago Hervé Pagès 16k
0
votes
0
replies
2.1k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
10.4 years ago Hervé Pagès 16k
0
votes
0
replies
721
views
BSgenome.Mmulatta.UCSC
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
10.5 years ago Hervé Pagès 16k
0
votes
1
reply
1.1k
views
Fwd: [devteam-bioc] information about genefilter package
Microarray genefilter limma Microarray genefilter limma
updated 10.6 years ago by 65k • written 10.6 years ago by 16k
0
votes
2
replies
6.4k
views
how to obtain base counts from BAM file at specific genomic coordinates
SNP Sequencing Coverage Alignment Cancer Biostrings PROcess IRanges GenomicRanges SNP
updated 10.6 years ago by ★ 11k • written 10.6 years ago by 16k
0
votes
0
replies
888
views
A question when using Biostrings
Cancer Biostrings Cancer Biostrings
10.6 years ago Hervé Pagès 16k
1
vote
1
reply
2.8k
views
Creat PWM from Alignment with Gaps
Alignment Cancer Alignment Cancer
updated 10.6 years ago by ▴ 250 • written 10.6 years ago by 16k
0
votes
0
replies
774
views
help with forging a BSgenome data
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
10.6 years ago Hervé Pagès 16k
0
votes
0
replies
589
views
Finding Candidate Binding Sites for multiple Known Transcription Factors simultaneously
Cancer Cancer
10.6 years ago Hervé Pagès 16k
0
votes
2
replies
1.2k
views
Fwd: BioStrings PairwiseAlignment deletion() insertion() function
Alignment Cancer Biostrings IRanges Alignment Cancer Biostrings IRanges
updated 10.6 years ago by ▴ 30 • written 10.6 years ago by 16k
0
votes
1
reply
857
views
[devteam-bioc] Depth of Coverage and Base counts from BAM file
Coverage Cancer Rsamtools Coverage Cancer Rsamtools
10.7 years ago Hervé Pagès 16k
0
votes
1
reply
981
views
convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by 16k
0
votes
1
reply
886
views
Semantics of GenomicRanges gaps()
Cancer GenomicRanges Cancer GenomicRanges
updated 11.0 years ago by ★ 11k • written 11.0 years ago by 16k
0
votes
3
replies
1.1k
views
Deleting object rows while looping - II
Coverage Alignment Cancer PROcess Coverage Alignment Cancer PROcess
updated 11.1 years ago by ★ 13k • written 11.1 years ago by 16k
0
votes
0
replies
1.2k
views
stringDist ?
Cancer Biostrings Cancer Biostrings
11.1 years ago Hervé Pagès 16k
0
votes
5
replies
4.7k
views
Finding mismatches between reads and reference sequence
Infrastructure Cancer BSgenome BSgenome Infrastructure Cancer BSgenome BSgenome
updated 11.1 years ago by ▴ 30 • written 11.1 years ago by 16k
0
votes
2
replies
1.5k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
11.1 years ago Hervé Pagès 16k
0
votes
0
replies
853
views
question about how to get ranges in Biostrings
Cancer IRanges Gviz Cancer IRanges Gviz
11.2 years ago Hervé Pagès 16k
0
votes
0
replies
991
views
Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
11.2 years ago Hervé Pagès 16k
0
votes
0
replies
831
views
Extract Exon Features from GenomicFeatures Leads to Inconsistent Pairing of Gene and Exon IDs
Cancer GenomicFeatures Cancer GenomicFeatures
11.3 years ago Hervé Pagès 16k
0
votes
0
replies
870
views
Error - BSgenomeForge function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
11.3 years ago Hervé Pagès 16k
0
votes
0
replies
643
views
Bos taurus genome
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
11.4 years ago Hervé Pagès 16k
0
votes
28
replies
2.5k
views
countMatches() (was: table for GenomicRanges)
Cancer IRanges Cancer IRanges
updated 11.4 years ago by ★ 11k • written 11.4 years ago by 16k
0
votes
0
replies
1.3k
views
Why does a call to "unique" removes a DNAStringSet names?
Cancer Cancer
11.4 years ago Hervé Pagès 16k
0
votes
8
replies
2.0k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.5 years ago by ★ 11k • written 11.5 years ago by 16k
0
votes
2
replies
633
views
how to get the first hit in each sequence from vmatchPattern results
Cancer Cancer
updated 11.6 years ago by ★ 2.0k • written 11.6 years ago by 16k
0
votes
8
replies
2.0k
views
good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 11.8 years ago by ★ 13k • written 11.8 years ago by 16k
0
votes
2
replies
1.0k
views
on PWM in biostrings
Cancer Cancer
updated 11.8 years ago by ▴ 60 • written 11.8 years ago by 16k
0
votes
1
reply
1.4k
views
PDict in GenomicRanges
Preprocessing Cancer Preprocessing Cancer
11.8 years ago Hervé Pagès 16k
0
votes
6
replies
2.0k
views
Biostring: print sequence alignment to file
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 11.8 years ago by ▴ 100 • written 11.8 years ago by 16k
0
votes
5
replies
1.1k
views
GappedAlignmentPairs requests
Alignment Cancer GenomicRanges Alignment Cancer GenomicRanges
updated 11.9 years ago by ★ 11k • written 11.9 years ago by 16k
0
votes
4
replies
848
views
BSgenome packages for new UCSC rn5 and galGal4 assemblies
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 11.9 years ago by ★ 6.5k • written 11.9 years ago by 16k
107 results • Page 1 of 3
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