error with STRINGdb package to download the graph
0
0
Entering edit mode
Salvo88 ▴ 20
@salvo88-14379
Last seen 4.9 years ago

Hi everyone,

I tried to download the start using STRINGdb but it did not work

this is the code I tried to use :

library(STRINGdb)
string_db <- STRINGdb$new(version="10", species=9606,
                          score_threshold=400, input_directory="" )
full.graph <- string_db$get_graph()

while using this function:

string_db <- STRINGdb$new(version="10", species=9606,
                          score_threshold=400, input_directory="" )

I have this error:

Error in open.connection(file, "rt") : cannot open the connection
In addition: Warning message:
In open.connection(file, "rt") :
  InternetOpenUrl failed

I tried to look for past questions and I found this one but is not helpful.

unable to connect to 'string.uzh.ch' on port 80

Thank you for your help,

Salvo

stringdb R • 854 views
ADD COMMENT
0
Entering edit mode

Can you please also provide your sessionInfo() ? I just tried running the above commands and did not receive an ERROR so I am curious to your system os and version information.

ADD REPLY

Login before adding your answer.

Traffic: 319 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6