Question

rhdf5 error writing matrix in hdf5 file

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wolfgang.biener • 0

@wolfgangbiener-16936

Last seen 5.8 years ago

Hello,

Below is the code leading to the error. It is basically copied from the example:

rm(list = ls())

library(rhdf5)

setwd('~/prg/git/test')

h5createFile("myhdf5file2.h5")
h5createGroup("myhdf5file2.h5","foo")
A = matrix(1:10,nr=5,nc=2)
h5write(A, file = "myhdf5file2.h5",name = "foo/A")

Error in on.exit(H5Sclose(h5spaceMem), add = TRUE, after = FALSE) :
unused argument (after = FALSE)

rhdf5 • 816 views

ADD COMMENT • link updated 5.7 years ago by Mike Smith ★ 6.5k • written 5.8 years ago by wolfgang.biener • 0

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Can you update your post with the output of the command sessionInfo() so we can see the versions of R and rhdf5 you're using?

ADD REPLY • link 5.8 years ago Mike Smith ★ 6.5k

score 0 · Answer 1 · 2018-09-04

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Entering edit mode

Mike Smith ★ 6.5k

@mike-smith

Last seen 23 hours ago

EMBL Heidelberg

The argument after was only added to on.exit() in R 3.5.0. Upgrading to this version of the R or newer should solve the issue.

ADD COMMENT • link 5.7 years ago Mike Smith ★ 6.5k