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14
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How to add Ensembl ids after Pseudobulk analysis by DESeq2
Seurat
DESeq2
single-cell
scRNA
Pseudobulk
5 hours ago
Sara
• 0
0
votes
0
replies
27
views
conumee with Infinium MethylationEPIC v2.0
conumee
1 day ago
Maximus
• 0
0
votes
4
replies
96
views
Cannot install oligo on Fedora
oligo
source
Install
updated 1 day ago by
James W. MacDonald
66k • written 1 day ago by
Guido Hooiveld
★ 4.0k
0
votes
4
replies
239
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
updated 2 days ago by
Wei Shi
★ 3.6k • written 2 days ago by
atan
• 0
0
votes
0
replies
38
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
4 days ago • updated 3 days ago
abhisek001
• 0
0
votes
0
replies
40
views
Conditional analysis
GENESIS
5 days ago
SuperDad
• 0
0
votes
0
replies
42
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
5 days ago • updated 4 days ago
Raghad
• 0
0
votes
0
replies
12
views
Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
6 days ago
shahrozimmac
0
0
votes
0
replies
43
views
Processing of curatedmetagenomics
curatedMetagenomicData
6 days ago
Edward
• 0
0
votes
7
replies
361
views
ChAMP installation issue
Cha
ChAMP
updated 3 days ago by
James W. MacDonald
66k • written 13 days ago by
e1271094
• 0
0
votes
2
replies
239
views
Visium RNA
metaMSdata
written 9 weeks ago by
Karlison
• 0
1
vote
4
replies
1.6k
views
conumee with Infinium MethylationEPIC v2.0
MethylationEPICv2.0
conumee
updated 1 day ago by
Maximus
• 0 • written 14 months ago by
luca.s
▴ 50
0
votes
2
replies
762
views
Help with ENmix readidat
ENmix
IlluminaHumanMethylationEPICmanifest
updated 5 days ago by
James W. MacDonald
66k • written 2.0 years ago by
Daphna
• 0
4
votes
3
replies
1.0k
views
BayesSpace parameters for DLPFC Visium data
BayesSpace
written 3.1 years ago by
aspangl1
▴ 30
0
votes
1
reply
735
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 4 days ago by
baptiste.bidon
• 0 • written 4.8 years ago by
ag1805x
▴ 80
15 results • Page
1 of 1
Recent ...
Replies
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
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