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0
votes
0
replies
858
views
Help with comparisons of lists of fold changes
12.6 years ago
David
▴ 860
0
votes
0
replies
1.5k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
12.8 years ago
stefano iacus
▴ 430
0
votes
0
replies
996
views
17th Summer Institute in Statistical Genetics, Seattle, July 9-27
Genetics
Genetics
12.3 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
726
views
marray intensity normalization?
Normalization
limma
marray
convert
Normalization
limma
marray
convert
19.0 years ago
Gordon Smyth
50k
0
votes
4
replies
906
views
Annotation of DEXSeqHTML with biomaRt
dexseq
biomart
6.1 years ago
Matthew Thornton
▴ 360
0
votes
0
replies
879
views
Le monde des Finances est maintenant accessible � tous.
15.3 years ago
Katie
▴ 10
0
votes
0
replies
263
views
How to set dropout rate using splatSimDropout function of splatter ?
lazappi
13 months ago
shamsuzzaman86
• 0
0
votes
0
replies
826
views
extract genes from vennDiagram LIMMA ..How?,
limma
limma
19.2 years ago
SAURIN
★ 1.1k
0
votes
0
replies
776
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi
limma
lmm
lmfit
dmpFinder
3.0 years ago
kyleyxw
• 0
0
votes
2
replies
769
views
Support for BSgenomeViews objects in matchPWM
biostrings
6.0 years ago
s1437643
▴ 20
0
votes
0
replies
1.0k
views
Questions of Significance Analysis of Microarrays(SAM){siggenes}
siggenes
siggenes
19.5 years ago
yzu
▴ 10
0
votes
0
replies
515
views
Illumina vs Affy chips
affy
beadarray
lumi
xps
affy
beadarray
lumi
xps
15.0 years ago
Sean Davis
21k
0
votes
0
replies
1.1k
views
GSEA with variant proportions as input
GSEA
Variant Proportions
Input
8.8 years ago
manali.rupji
• 0
0
votes
0
replies
791
views
Problems with installation of Rgraphviz
Rgraphviz
Rgraphviz
18.0 years ago
jdmitrie@liacs.nl
▴ 10
0
votes
0
replies
647
views
bioconductor-download
AnnBuilder
AnnBuilder
21.2 years ago
Anita Grigoriadis
▴ 10
0
votes
0
replies
169
views
Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
clusterProfiler
gseKEGG
7 weeks ago
andromeda
• 0
0
votes
0
replies
631
views
what is the best way to correlate SFP data to a phylogenetic correlation?
17.2 years ago
Betty Gilbert
▴ 50
3
votes
4
replies
1.4k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 3.3 years ago by
Thomas Girke
★ 1.7k • written 3.5 years ago by
teresadijor
• 0
0
votes
1
reply
839
views
fdaNorm function is missing
flowStats
updated 2.8 years ago by
SamGG
▴ 350 • written 2.8 years ago by
Max
• 0
0
votes
0
replies
623
views
random gene list generator of given number and coding length
random generator
gene list
6.0 years ago
paul.hillman
• 0
1
vote
0
replies
2.5k
views
as.data.table method for GRanges modifies the original object by reference
genomicranges
data.table
6.8 years ago
alex.gos90
▴ 10
0
votes
0
replies
1.1k
views
ggbiplot
9.9 years ago
Guest User
★ 13k
0
votes
0
replies
1.4k
views
Job Announcement: Genome Informatics
Sequencing
Genetics
genomes
Sequencing
Genetics
genomes
12.2 years ago
Jenny Drnevich
★ 2.0k
0
votes
0
replies
1.8k
views
heatmap.2 question - plotting gene expression ordered by a vector
14.8 years ago
Yannick Wurm
▴ 220
0
votes
0
replies
955
views
Limma with contrasts
Microarray
Normalization
probe
affy
limma
Microarray
Normalization
probe
affy
limma
14.4 years ago
Matthew Willmann
▴ 60
0
votes
0
replies
748
views
Course Announcement: Advanced R / Bioconductor Programming, Oct. 15-16, Seattle, WA
Cancer
Cancer
11.7 years ago
Martin Morgan
25k
0
votes
0
replies
991
views
Robust Spline Normalization
Normalization
Normalization
14.8 years ago
Mohamed Lajnef
▴ 250
0
votes
0
replies
465
views
plier 1.2.0 compilation error (FC4 64bits)
18.3 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
841
views
gcrma and justRMA
vsn
gcrma
vsn
gcrma
20.2 years ago
Arne.Muller@aventis.com
▴ 620
0
votes
0
replies
387
views
Separate channels and common references
17.9 years ago
Francesco Favero
▴ 60
0
votes
0
replies
458
views
FW: AnnBuilder package and URLs
AnnBuilder
AnnBuilder
18.2 years ago
Sean Davis
21k
0
votes
0
replies
859
views
One read per line and other ordering of reads in Gviz
Gviz
2.7 years ago
pillailab1
• 0
0
votes
0
replies
615
views
Problem while installing
12.3 years ago
Reetu
▴ 20
2
votes
0
replies
2.4k
views
Error in x[["Version"]] : subscript out of bounds
10.3 years ago
Jerry Cholo
▴ 190
0
votes
0
replies
483
views
Are you Lost on the Marketing Concept -
PROcess
PROcess
15.3 years ago
Leslie Jolliff
▴ 10
0
votes
0
replies
562
views
Limma Vs Imagene?
limma
limma
20.6 years ago
utepandragon@tiscali.it
▴ 50
0
votes
0
replies
733
views
re: Loess
Regression
Regression
19.7 years ago
David Lee Duewer
▴ 40
0
votes
0
replies
623
views
Bioinformatics postdoctoral position
21.0 years ago
Kristina Hanspers
▴ 40
0
votes
0
replies
659
views
PhD studentships at EBI
Cancer
Cancer
20.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
884
views
Limma: different numbers of duplicated spots
celegans
celegans
17.2 years ago
Gordon Smyth
50k
0
votes
0
replies
1.3k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
8.6 years ago
lina.faller
▴ 10
0
votes
0
replies
746
views
Interaction estimation i R for Conjoint Analysis
15.1 years ago
Marcin
▴ 10
0
votes
0
replies
364
views
chi-squared
12.2 years ago
Guest User
★ 13k
0
votes
0
replies
497
views
Erratum: intensities from a print-tip
20.4 years ago
Laurent Gautier
★ 2.3k
0
votes
0
replies
1.1k
views
two questions about limma (cont.2)
Microarray
limma
Microarray
limma
17.2 years ago
De-Jian ZHAO
▴ 240
0
votes
0
replies
578
views
Limma and post statistical filtering of genes
Preprocessing
limma
Preprocessing
limma
15.3 years ago
Gordon Smyth
50k
0
votes
0
replies
729
views
flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.4 years ago
achaillon
• 0
7
votes
6
replies
2.0k
views
Help to find Volunteer who can review my bioconductor package before submission ?
r packages
submission
8.3 years ago
Jurat Shahidin
▴ 80
0
votes
2
replies
911
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
15 months ago • updated 14 months ago
shuangshuang
• 0
0
votes
0
replies
680
views
Arithmetic Operations Between GRanges' Scores
GenomicRanges
2.9 years ago
Dario Strbenac
★ 1.5k
1,000 results • Page
1 of 20
Recent ...
Replies
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
Awards
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Popular Question
to
Robert Castelo
★ 3.3k
Popular Question
to
kevin.rue
▴ 350
Popular Question
to
Wei Shi
★ 3.6k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
jovel_juan
▴ 30
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