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17
votes
4
replies
9.0k
views
Tutorial:
Updated Support Site Editor
support.bioconductor.org
editor
markdown
updates
Tutorial
updated 6 weeks ago by
Mj.A.
• 0 • written 5.3 years ago by
shepherl
3.9k
21
votes
10
replies
8.7k
views
Tutorial:
Bioconductor on Coursera
mooc
Tutorial
updated 6.1 years ago by
ifmrdatascience
• 0 • written 8.7 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
7.5k
views
Tutorial:
doParallel foreach already exporting variable(s)
doParallel
foreach
export
Tutorial
7.3 years ago
solo7773
▴ 10
7
votes
2
replies
6.2k
views
Tutorial:
Course Material from BioC 2015: Where Software and Biology Connect
bioc2015
course-material
Tutorial
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
Sonali Arora
▴ 390
7
votes
5
replies
6.1k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
11
votes
0
replies
5.8k
views
Tutorial:
Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges
Annotation
RNAseq
visualization
Tutorial
8.8 years ago
Martin Morgan
25k
3
votes
5
replies
5.0k
views
Tutorial:
Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
R
GEO
geoquery
geoquery error message
Tutorial
6.3 years ago
martinguerrerog89
▴ 20
8
votes
4
replies
4.4k
views
Tutorial:
Epigenomics RoadMap Project files now accessible via AnnotationHub
AnnotationHub
Epigenomics
BigData
RoadMap Project
NIH
Tutorial
updated 7.0 years ago by
vanesa_1230
• 0 • written 9.0 years ago by
Sonali Arora
▴ 390
6
votes
1
reply
3.9k
views
Tutorial:
Orchestrating a small, parallel, RNA-seq pre-processing workflow using R
rnaseq
biocparallel
workflows
sra
Tutorial
8.9 years ago
Sean Davis
21k
2
votes
0
replies
3.9k
views
Tutorial:
BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data
TCGA
GTEx
Tutorial
6.8 years ago
shepherl
3.9k
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
8.9 years ago
Sean Davis
21k
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.2 years ago
Vincent J. Carey, Jr.
6.7k
8
votes
0
replies
3.6k
views
Tutorial:
Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq
chipseq
visualization
metagenomics
proteomics
Tutorial
8.9 years ago
Martin Morgan
25k
4
votes
0
replies
3.4k
views
Tutorial:
Workflow for low-level analysis of single-cell RNA-seq data
scran
scater
single cell
Tutorial
7.7 years ago
Aaron Lun
★ 28k
0
votes
4
replies
3.3k
views
Tutorial:
Importing multiple .h5 files using tximport
tximport
Tutorial
updated 6.0 years ago by
Steve Lianoglou
★ 13k • written 6.0 years ago by
nelson.s.garcia
▴ 10
5
votes
1
reply
3.3k
views
Tutorial:
Prototyping An Analysis Pipeline For Lexogen 3'-UTR RNA-seq In Bioconductor
shortread
rsubread
ensembldb
Tutorial
8.1 years ago
phil.chapman
▴ 150
6
votes
1
reply
3.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
6.8 years ago
Wolfgang Huber
★ 13k
1
vote
0
replies
3.1k
views
Tutorial:
BoF Bioc2017: Infrastructure for efficient storage and processing of large-scale single-cell genomics data
single-cell
objectstorage
Tutorial
6.8 years ago
shepherl
3.9k
3
votes
8
replies
3.0k
views
Tutorial:
"developing" with HDF5Array
hdf5
DelayedArray
summarizedexperiment
Tutorial
7.3 years ago • updated 7.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
6
replies
2.6k
views
Tutorial:
use deseq2 in asthma
deseq2
Tutorial
6.0 years ago
krwyaong.ju
• 0
0
votes
2
replies
2.4k
views
Tutorial:
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA
lfmm
Tutorial
updated 7.0 years ago by
eric.frichot
• 0 • written 7.0 years ago by
afreedman405
• 0
3
votes
1
reply
2.2k
views
Tutorial:
Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry
proteomics
metabolomics
Tutorial
written 3.6 years ago by
Johannes Rainer
★ 2.0k
0
votes
0
replies
2.2k
views
Tutorial:
Using Subversion to update /devel branch of Bioconductor package
subversion
bioc-devel
package development
usedevel
Tutorial
6.8 years ago
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
2.2k
views
Tutorial:
Differential Methylation Analysis using ChAMP
champ
Tutorial
updated 4.8 years ago by
Yuan Tian
▴ 280 • written 4.9 years ago by
learning.iq84
• 0
4
votes
0
replies
2.1k
views
Tutorial:
How to post Salmon data to GEO for use with tximeta
salmon
tximeta
Tutorial
4.1 years ago
Michael Love
42k
1
vote
1
reply
2.0k
views
Tutorial:
How to download reference genomes using the RBioMart from ensembl?
BioMart
downloading reference genome
alignment
Tutorial
5.1 years ago
jcollidelcs
• 0
1
vote
2
replies
2.0k
views
Tutorial:
selecting result from deseq2
deseq2
Tutorial
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
Nas 1989
• 0
1
vote
1
reply
1.9k
views
Tutorial:
Update gene symbols in GeneSetCollection
gseabase
msigdb
genesetcollection
Tutorial
written 5.9 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.8k
views
Tutorial:
Reading csv file in minfi
minfi
infinium 450K
Tutorial
5.2 years ago
lalchungnungabt17
• 0
0
votes
0
replies
1.7k
views
Tutorial:
[LIBD rstats club] Bioconductor overview
bioconductor
libdrstats
Tutorial
updated 4.0 years ago by
Laurent Gatto
1.6k • written 4.0 years ago by
Leonardo Collado Torres
★ 1.0k
0
votes
1
reply
1.3k
views
Tutorial:
Online workshop "Working with ChatGPT in R" 2023-03-09
chatgpt
programming
updated 24 days ago by
gptnederlands.nl
• 0 • written 14 months ago by
Wolfgang Huber
★ 13k
0
votes
0
replies
957
views
Tutorial:
Read data file containing both counts and annotation into edgeR
rpkm
edgeR
featureCounts
8 months ago
Gordon Smyth
50k
1
vote
0
replies
290
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
18 days ago
BioinfGuru
▴ 30
33 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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